Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40112
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0006 + 16257288-16259522                                         28   7.4  
02_03_0375 + 18287281-18288168                                         28   9.7  

>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 366 SVNLIPLQRDAGPIAKNLGCPNWSADVAI 280
           +V+  PL R  GP+ KN G P W +D  I
Sbjct: 229 NVHKPPLGR-TGPVVKNAGWPTWGSDDVI 256


>02_03_0375 + 18287281-18288168
          Length = 295

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -2

Query: 228 DGLGRDLDP-RAAGLCRVSPCTARRSTALQCCGSSTRP--RLWFPLLSLQLEIYVPSPHD 58
           DG  R  DP RA  L    P    R  ++    + ++P   LWF L     +  VPS   
Sbjct: 121 DGWQRMQDPSRAISLGGRRPAACTRGGSIYRFINESQPCALLWFSLRDEAFDA-VPSSPG 179

Query: 57  CVPCCNDQHDRDPSSE 10
           C  C ND    D + E
Sbjct: 180 CTACDNDDRLADLAGE 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,074,070
Number of Sequences: 37544
Number of extensions: 275979
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)