Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40111
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 117 2e-27
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 117 2e-27
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.0
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 9.3
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 117 bits (282), Expect = 2e-27
Identities = 49/74 (66%), Positives = 60/74 (81%)
Frame = +2
Query: 32 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 212 TCQVAYSRIEGDHI 253
TCQ+ SR+ GD++
Sbjct: 61 TCQIVSSRVNGDYV 74
Score = 104 bits (249), Expect = 2e-23
Identities = 48/92 (52%), Positives = 65/92 (70%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220
Query: 690 RQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 785
+QFS I G+ +D +E IY +A+ IR DPS
Sbjct: 221 KQFSGLIADGIESDQLEDIYAEAYAKIREDPS 252
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = +1
Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
A+S ELPRYG+K GL N+ AAY+TG E +++
Sbjct: 78 AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137
Query: 442 GPGAFRCYLDVGLARTTTGA 501
GP F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 117 bits (282), Expect = 2e-27
Identities = 49/74 (66%), Positives = 60/74 (81%)
Frame = +2
Query: 32 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 212 TCQVAYSRIEGDHI 253
TCQ+ SR+ GD++
Sbjct: 61 TCQIVSSRVNGDYV 74
Score = 104 bits (249), Expect = 2e-23
Identities = 48/92 (52%), Positives = 65/92 (70%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220
Query: 690 RQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 785
+QFS I G+ +D +E IY +A+ IR DPS
Sbjct: 221 KQFSGLIADGIESDQLEDIYAEAYAKIREDPS 252
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = +1
Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
A+S ELPRYG+K GL N+ AAY+TG E +++
Sbjct: 78 AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137
Query: 442 GPGAFRCYLDVGLARTTTGA 501
GP F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 361 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 269
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -2
Query: 319 QHNLSDQP-SHHNVATHV-NKQRTNMVTFNPR 230
QH LSDQP S +N ++V +++R+N V+ R
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 160 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 2
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 642 AEYMRSLEQDDEDSFKRQFSKYIK 713
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,892
Number of Sequences: 5004
Number of extensions: 64811
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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