Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40111
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 121 7e-28
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 120 2e-27
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 7.3
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 28 9.7
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 121 bits (291), Expect = 7e-28
Identities = 48/92 (52%), Positives = 74/92 (80%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQ 217
Query: 690 RQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 785
FS+Y+K G+ AD +EA+YKK H AIRADP+
Sbjct: 218 AHFSEYLKKGIDADGMEALYKKVHAAIRADPT 249
Score = 99.5 bits (237), Expect = 3e-21
Identities = 47/75 (62%), Positives = 55/75 (73%)
Frame = +2
Query: 35 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 214
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 215 CQVAYSRIEGDHIGA 259
Q+ Y+ I GD + A
Sbjct: 60 AQIVYATIAGDIVMA 74
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/80 (50%), Positives = 43/80 (53%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
AAYSHELPRYG++VGLTNYAAAY TG +Y VEP D
Sbjct: 75 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPAD 134
Query: 439 NGPGAFRCYLDVGLARTTTG 498
FR LDVGL RTTTG
Sbjct: 135 E-RRPFRALLDVGLIRTTTG 153
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 120 bits (288), Expect = 2e-27
Identities = 47/92 (51%), Positives = 74/92 (80%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQ 217
Query: 690 RQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 785
FS+Y+K G+ AD +E++YKK H AIRADP+
Sbjct: 218 AHFSEYLKKGIDADGMESLYKKVHAAIRADPT 249
Score = 101 bits (243), Expect = 5e-22
Identities = 48/75 (64%), Positives = 56/75 (74%)
Frame = +2
Query: 35 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 214
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 215 CQVAYSRIEGDHIGA 259
Q+ Y+ I GD + A
Sbjct: 60 AQIVYATIAGDIVMA 74
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/80 (50%), Positives = 43/80 (53%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
AAYSHELPRYG++VGLTNYAAAY TG +Y VEP D
Sbjct: 75 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPAD 134
Query: 439 NGPGAFRCYLDVGLARTTTG 498
FR LDVGL RTTTG
Sbjct: 135 E-RRPFRALLDVGLIRTTTG 153
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 223 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 44
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 43 NESH 32
+ H
Sbjct: 171 GDIH 174
>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 364 FEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIFVGETHN 185
FEA+ + L ML+H + S H++ ++ R V+F R+ +++C +++ + +
Sbjct: 1018 FEALKKIELFNLKMLKHIKCFRLSPHDMFPSLSVLR---VSFCDRLKNISCTMYLSKLQH 1074
Query: 184 QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEF-YLVPLE 68
+ C + S + +FP L F YL LE
Sbjct: 1075 LEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLE 1114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,714,592
Number of Sequences: 37544
Number of extensions: 415450
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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