Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40111
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   135   4e-32
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   3.8  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   3.8  
L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  135 bits (326), Expect = 4e-32
 Identities = 61/76 (80%), Positives = 68/76 (89%)
 Frame = +2

Query: 32  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 212 TCQVAYSRIEGDHIGA 259
             Q+AYS+IEGD + A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/90 (58%), Positives = 67/90 (74%)
 Frame = +3

Query: 516 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 695
           MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+++DED +KRQ
Sbjct: 162 MKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQ 221

Query: 696 FSKYIKLGVTADAIEAIYKKAHEAIRADPS 785
           FSK++  G+ AD + A Y+K H AIRAD S
Sbjct: 222 FSKFLAAGLNADNLVATYQKVHSAIRADAS 251



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 38/81 (46%), Positives = 46/81 (56%)
 Frame = +1

Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
           +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE  +
Sbjct: 77  SAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE-E 135

Query: 439 NGPGAFRCYLDVGLARTTTGA 501
                F+  LD+GLARTTTG+
Sbjct: 136 GDRAPFKAVLDIGLARTTTGS 156


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 593 FGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAKPTSK*HLNAPGPLST 432
           F + ++   SF   R   +T  S   SS+T +     +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 593 FGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAKPTSK*HLNAPGPLST 432
           F + ++   SF   R   +T  S   SS+T +     +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
 Frame = +3

Query: 429 TCRQWTRSI*MLFGCRLSTHHYWCSCLGAMKGAVDGGLNVPHSIKRFPG----YDAESKK 596
           TC+Q T +   +F C    +   C  +   +  +DG   + +S K FP      +    K
Sbjct: 96  TCQQMTATEQWIFLCAAHKNPNECPAIDYTRHTLDGAATLLNSNKYFPSRVNIKEISISK 155

Query: 597 FNAEVHRAHIFGLHVAEYMRSL--EQDDEDSFKRQFSKYI 710
             +   R +    H   + R L  E ++E    ++F+ Y+
Sbjct: 156 LGSVARRVYRIFSHAFFHHRKLFDEFENETHLCKRFTTYV 195


>AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical
           protein D2063.4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = -1

Query: 749 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELF 591
           VDGF ++CS S   V + L ++++  +L +   +HV  ++  ++++ +   IE++
Sbjct: 53  VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVY 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,336
Number of Sequences: 27780
Number of extensions: 373359
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)