Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40109
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 88 2e-18
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 56 8e-09
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 30 0.35
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 30 0.46
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 1.1
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 1.1
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 1.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.6
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 5.6
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 7.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.9
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 87.8 bits (208), Expect = 2e-18
Identities = 36/84 (42%), Positives = 56/84 (66%)
Frame = +1
Query: 247 QIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPY 426
++ + V+GA+G D L L + +Q R+ +Y H + M+ + A M+ T+LY KRFFPY
Sbjct: 49 EVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPY 108
Query: 427 YVSNVLAGLDSDGKGCVYSYDPIG 498
YV +AG+D +GKG +YS+DP+G
Sbjct: 109 YVYTTVAGIDKEGKGEIYSFDPVG 132
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +3
Query: 519 RAGGSAAAQLQPLLDNQIGLKNM--------QNVTEAPLPREKALALLKDVFISAAERDI 674
RAGGSAA + P LDNQ+ L N + L E+A+ + D F SA ER I
Sbjct: 140 RAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFTSAGERHI 199
Query: 675 YTGDSIYILIITANGIQEEKFELRKD 752
GDS+ + IIT G++ L+KD
Sbjct: 200 EVGDSVLVKIITKEGVETRIIPLKKD 225
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +2
Query: 110 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEV 50
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = +1
Query: 256 ESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVS 435
+ T LG TG D TL L + ++ +Y+ + + A ++S+ LY KRF PY+
Sbjct: 47 DKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSF 106
Query: 436 NVLAGLDSDGKGCVYSYDPIGHCAPITSALVV 531
V+AG+ +D + +D IG C +V
Sbjct: 107 PVVAGVSNDNTPFICGFDSIG-CIDFAEDFIV 137
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 137 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
NGGS VA+AG + I +D RL T + K+F +
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAM 45
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 140 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLLRVQYW 271
G +IV + D V+GADTR + G I ++ KKL L+ W
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKL-HLISPNIW 77
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 29.9 bits (64), Expect = 0.46
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = -3
Query: 358 ICYARVRTSASSLVEDASRLMCHTSSQSLPIL----YSQ*FEQLFL-VSGIYGKS--SAE 200
+CY+ T + LVE R M H + S+ I+ ++ +Q+ +S G S +
Sbjct: 240 LCYSLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTD 299
Query: 199 TSVCSDNGIIIAGDG---YNTTSVVRVGLETMLFRTR 98
C DNGI+IA G Y T V T+ R R
Sbjct: 300 ERFCIDNGIMIAQAGLLAYKTGDRCAVAESTITQRYR 336
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 358 ICYARVRTSASSLVEDASRLMCHTSSQSLPILY 260
+CY+ T++ L+E + H + SLPI+Y
Sbjct: 828 VCYSSFLTASPRLMEPVYMVEVHAPADSLPIIY 860
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 519 RAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 665
+AG S A + LL+NQI +N+T + P + ++K++ ++A+E
Sbjct: 540 KAGHSEAIERLALLENQIQEPEPENITSSQYPNQD---VIKEIPVTASE 585
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 196
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 329 CRCTNTSITNL*PLRQSHRCSQLCCI 406
CRCT T N+ L Q + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 232 VSGIYGKSSAETSVCSDNGIIIAGDGYN 149
V G G ++E VCSD G+ + DG N
Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 155 AIAGDDYAVIGADTRLSTGFSI 220
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 569 LIVEERLQLCSSGTTSAEVMGAQCPIGS*LYTHPLPS 459
LI E R L GTT A A + +Y HP+ S
Sbjct: 134 LIRESRHVLLREGTTGARTWEAGMALAEYIYQHPVQS 170
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 325 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 414
R Q ++NK M T A M TM+++KR
Sbjct: 666 RWQFRTIKNNKDMQTKAKRAMRETMVFWKR 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,779
Number of Sequences: 5004
Number of extensions: 72444
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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