Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40109
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 104 1e-22
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 86 3e-17
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 54 2e-07
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 53 3e-07
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 45 8e-05
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 31 1.1
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 30 1.9
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 29 4.5
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 29 4.5
02_04_0641 - 24667637-24667753,24670088-24670324 29 4.5
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 29 5.9
11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074... 28 7.8
10_06_0054 - 10122703-10122983,10123549-10125376 28 7.8
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 104 bits (249), Expect = 1e-22
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
Frame = +1
Query: 238 KAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRF 417
K ++ + L ++G D L + L AR +Y+H+HNK M+ PA+AQ+LS LYYKRF
Sbjct: 46 KICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRF 105
Query: 418 FPYYVSNVLAGLDSDGKGCVYSYDPI------GHCAPIT-SALVVPLL 540
FPYY NVL GLDS+GKGCV++YD + G+ A T SAL++P+L
Sbjct: 106 FPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVL 153
Score = 64.5 bits (150), Expect = 1e-10
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +3
Query: 516 FRAGGSAAAQLQPLLDNQIGLKN--MQNVTEA--PLPREKALALLKDVFISAAERDIYTG 683
+ A G+ +A + P+LDNQ+ + + +A PL +A+ L+KDVF SA ERDIYTG
Sbjct: 139 YSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTG 198
Query: 684 DSIYILIITANGIQEEKFELRKD 752
D + I++I G + E +LRKD
Sbjct: 199 DKLEIVVINKAGTKREYIDLRKD 221
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2
Query: 128 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
Y +NGG+ VAIAG DY V+ ADTRLS G++I TRD K+ +L
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICEL 50
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 86.2 bits (204), Expect = 3e-17
Identities = 47/108 (43%), Positives = 60/108 (55%), Gaps = 21/108 (19%)
Frame = +1
Query: 238 KAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRF 417
K + + VL ++G D L R L A+ +YEH HNK M+ PA+AQ+LS LYYKRF
Sbjct: 44 KIAHLADKCVLASSGFQGDVKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRF 103
Query: 418 FPYYVSNVLAGLDSD---------------------GKGCVYSYDPIG 498
FPYY NVL GLDS+ GKGCV++YD +G
Sbjct: 104 FPYYAFNVLGGLDSEVAAHQYERMITTCENIFSSFAGKGCVFTYDAVG 151
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +3
Query: 516 FRAGGSAAAQLQPLLDNQIGLKN--MQNVTEA--PLPREKALALLKDVFISAAERDIYTG 683
+ A G+ AA + P+LDNQ+ + + +A PL + A+ L+KDVF SA ERDIYTG
Sbjct: 158 YSAQGTGAALMMPVLDNQLKSPSPLLLPARDAVTPLSQSDAVDLVKDVFASATERDIYTG 217
Query: 684 DSIYILIITANGIQEEKFELRKD 752
D + I++I + G E ELRKD
Sbjct: 218 DKLEIVVINSAGSHREFIELRKD 240
Score = 61.3 bits (142), Expect = 9e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +2
Query: 116 RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
RFE Y +NGG+ VA+AG DY V+ ADTRLS G+SI +RD K+ L
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHL 48
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +1
Query: 235 KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 414
++ +I + +G +G D TL + L R ++Y+ + M A ++S +LY KR
Sbjct: 153 QRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKR 212
Query: 415 FFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
F PY+ V+AGL D + + + D IG
Sbjct: 213 FGPYFCQPVIAGLGEDNEPFICTMDCIG 240
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
NG ++VA+ G + I +D RL D +++FK+
Sbjct: 120 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKI 158
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/88 (30%), Positives = 47/88 (53%)
Frame = +1
Query: 235 KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 414
++ +I + +G +G D TL + L R ++Y+ + M A A ++S +LY KR
Sbjct: 49 QRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKR 108
Query: 415 FFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
F PY+ V+AGL + + + + D IG
Sbjct: 109 FGPYFCQPVIAGLGDNDEPFICTMDCIG 136
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
NG ++VA+ G + I +D RL D +++FK+
Sbjct: 16 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKI 54
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 220 IYQRPKKAVQIIES-TVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLST 396
+++ + V +++S ++GA+G D + T +Q + +Y+ +N ++T A A
Sbjct: 27 VHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRG 86
Query: 397 MLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPI 495
L R PYYV+ +LAG DSD +Y D I
Sbjct: 87 ELATALRKNPYYVNVLLAGYDSDVGASLYYIDYI 120
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 522 AGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPRE 620
AGG++AA L P+L + +GL N PLP+E
Sbjct: 110 AGGASAAALSPILASSLGL-NRIKTRSGPLPQE 141
>09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 519 GSYGRTVSDRVVTIYTSLTVAVQTRQHV 436
G+Y R VS ++V IY S+ V+ + RQHV
Sbjct: 975 GNYVRVVSKQMVGIYVSVWVSRKLRQHV 1002
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 140 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
G +IV + D V+ AD+R STG + R K+ +L
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQL 62
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 140 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
G +IV + D V+ AD+R STG + R K+ +L
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQL 62
>02_04_0641 - 24667637-24667753,24670088-24670324
Length = 117
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 77 NFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGF 214
N P A+PGA R + +G I+GD YA +G D+ GF
Sbjct: 56 NTPAAALPGAGPLR---RSKSGTKSAKISGDIYADLGVDSEFEIGF 98
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 515 LPRWWFRCCTAATAPRQSNWL 577
LPRWW CC T R ++++
Sbjct: 397 LPRWWCCCCFTVTGSRFTDYI 417
>11_04_0228 +
15105752-15105921,15106774-15106919,15107369-15107448,
15107598-15107720,15107814-15107906
Length = 203
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 479 IVTTLSDTVRP*LPRWWFRCCTAATAPRQSNW 574
+V T S T R L WW CC + S+W
Sbjct: 1 MVATRSTTSRRCLTWWWLACCCFVSWVASSSW 32
>10_06_0054 - 10122703-10122983,10123549-10125376
Length = 702
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 382 VRLPEWS*ICYARVRTSAS-SLVEDASRLMCHTSSQSLPILYSQ*FEQLFLVSGIY 218
+ +P+W+ C A + + + S +AS + C+T +LP + Q Q + +SG Y
Sbjct: 385 IGMPQWN-ECSALAKLTVNLSEWSNASSVDCNTKPCALPSTFPQPHGQFYAMSGFY 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,288,198
Number of Sequences: 37544
Number of extensions: 485646
Number of successful extensions: 1213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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