Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40109
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 91 1e-18
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 91 1e-18
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 52 5e-07
U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily ass... 29 3.1
U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily ass... 29 3.1
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 29 3.1
AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic gl... 29 3.1
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.0
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 29 5.3
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 5.3
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 5.3
Z68106-5|CAA92129.1| 557|Caenorhabditis elegans Hypothetical pr... 28 7.1
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 28 7.1
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 28 7.1
Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical p... 28 9.3
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 28 9.3
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +1
Query: 217 HIYQRPKKAVQII-ESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS 393
+I R + +QI+ ++ +L +G + D L L ++LQ+R+ Y ++ M+ A++LS
Sbjct: 77 NILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS 136
Query: 394 TMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
LYY+RFFPYY +LAG+D GKG V+SYDPIG
Sbjct: 137 RNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIG 171
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 516 FRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALLKDVFISAAERDIYTGDSI 692
+ A G+A + P LD QIG + E P L ++A++L+KD F AAER+I TGD I
Sbjct: 178 YSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTGDKI 237
Query: 693 YILIITANGIQEEKF-ELRKD 752
+++I A KF LR+D
Sbjct: 238 HLVIAEAGKPVVVKFLPLRED 258
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 107 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKL 244
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKI 86
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +1
Query: 217 HIYQRPKKAVQII-ESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS 393
+I R + +QI+ ++ +L +G + D L L ++LQ+R+ Y ++ M+ A++LS
Sbjct: 77 NILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS 136
Query: 394 TMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
LYY+RFFPYY +LAG+D GKG V+SYDPIG
Sbjct: 137 RNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIG 171
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 516 FRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALLKDVFISAAERDIYTGDSI 692
+ A G+A + P LD QIG + E P L ++A++L+KD F AAER+I TGD I
Sbjct: 178 YSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTGDKI 237
Query: 693 YILIITANGIQEEKF-ELRKD 752
+++I A KF LR+D
Sbjct: 238 HLVIAEAGKPVVVKFLPLRED 258
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 107 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKL 244
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKI 86
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +1
Query: 235 KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 414
KK ++ + +G G D T+ + R +YE N+++ +++M+S + Y R
Sbjct: 40 KKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHR 99
Query: 415 FFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
F Y+ ++AGLD K + D IG
Sbjct: 100 FGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Score = 35.9 bits (79), Expect = 0.035
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 140 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
GG++VA+AGD+ I +D R+ + DQKK+ K+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKV 45
>U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform a protein.
Length = 462
Score = 29.5 bits (63), Expect = 3.1
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 197 RLSTGFSIYTRDQKKLFKLLRVQY-WERLAAGVTH*P*RVFYKRGCRCTNTSIT-NL*PL 370
RL T ++T ++KK KL R Q + G +F K+ R +N T N P
Sbjct: 264 RLQTECDVFTYNRKKKAKLSRAQKRFIFFFDGAV-----MFCKK--RVSNPGTTLNSEPE 316
Query: 371 RQSHR-CSQLCCITNDFSHTTYPTCWRVWTATVRDVYIVTTLSDTVR 508
H+ C + + D S T + + VW D Y++ T+ T R
Sbjct: 317 YFEHKFCIPIISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTAR 363
>U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform b protein.
Length = 638
Score = 29.5 bits (63), Expect = 3.1
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 197 RLSTGFSIYTRDQKKLFKLLRVQY-WERLAAGVTH*P*RVFYKRGCRCTNTSIT-NL*PL 370
RL T ++T ++KK KL R Q + G +F K+ R +N T N P
Sbjct: 440 RLQTECDVFTYNRKKKAKLSRAQKRFIFFFDGAV-----MFCKK--RVSNPGTTLNSEPE 492
Query: 371 RQSHR-CSQLCCITNDFSHTTYPTCWRVWTATVRDVYIVTTLSDTVR 508
H+ C + + D S T + + VW D Y++ T+ T R
Sbjct: 493 YFEHKFCIPIISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTAR 539
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +2
Query: 434 PTCWRVWTATVRDVYIVTTLSDTVRP*LPRWW---FRCCTA 547
P W++WTA + VT V P W F CCTA
Sbjct: 564 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTA 604
>AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic
glutamate receptor GLR-5 protein.
Length = 425
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +2
Query: 434 PTCWRVWTATVRDVYIVTTLSDTVRP*LPRWW---FRCCTA 547
P W++WTA + VT V P W F CCTA
Sbjct: 124 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTA 164
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +1
Query: 238 KAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRF 417
K + I + V G D TR++ +YE S+T A ++ + LY R
Sbjct: 104 KILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRG 163
Query: 418 FPYYVSNVLAGLDSDG 465
V +++AG D G
Sbjct: 164 QGLSVGSMVAGYDKKG 179
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 205 HWIFHIYQRPKKAVQIIESTVLGATGCW-CDTLTLTRLLQARMQMYEHEH-NKSMTT 369
H I H Q PKK + + T + T C+ CD+ +T +Q + +H H ++M+T
Sbjct: 1351 HTILHAVQCPKKFIATVAPTEVADTSCFVCDSNLVT--MQMIEEDADHIHWKQTMST 1405
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 223 YQRP-KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTM 399
YQ+P +AV I+ LG T T L A + + H+ +K P + QMLSTM
Sbjct: 865 YQKPFNRAVMIL----LGVLADESVAKTRTELKAAAAEWF-HDCSKHQDLPRIVQMLSTM 919
Query: 400 L 402
L
Sbjct: 920 L 920
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 223 YQRP-KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTM 399
YQ+P +AV I+ LG T T L A + + H+ +K P + QMLSTM
Sbjct: 865 YQKPFNRAVMIL----LGVLADESVAKTRTELKAAAAEWF-HDCSKHQDLPRIVQMLSTM 919
Query: 400 L 402
L
Sbjct: 920 L 920
>Z68106-5|CAA92129.1| 557|Caenorhabditis elegans Hypothetical
protein F41E7.6 protein.
Length = 557
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 235 KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQM-YEHEHNKSMTTPAVAQMLSTMLYY 408
K V + T GAT C TL ++Q +QM Y HNK T A ST ++Y
Sbjct: 366 KTNVNVYHYTNFGATYCKQRTLYADTIIQIALQMAYLKTHNKLAPTYETA---STRMFY 421
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 549 QPLLDNQIGLKNMQNVTEAPLPREKAL 629
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 549 QPLLDNQIGLKNMQNVTEAPLPREKAL 629
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical
protein T10C6.4 protein.
Length = 294
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -2
Query: 365 VIDLLCSCSYICILACRRRV-----KVNVSHQQPVAPNTVLSII*TAFFGLWYI 219
+I +L ++I ++ CR+ + K N A ++ I FFG+WY+
Sbjct: 175 IITILDISTFIILITCRKSIFKGQSKENKQRDINFAMQVIIQGIVMVFFGVWYV 228
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 500 CPIGS*LYTHPLPSLSKPANTLDT*YGKNRL*YNIV 393
C + + + H +PSL P T D +GK L Y +V
Sbjct: 247 CAVYAFMCHHSIPSLITPMRTKDNVFGKIALVYGVV 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,443
Number of Sequences: 27780
Number of extensions: 416217
Number of successful extensions: 1140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -