Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40108
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    79   8e-16
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   5.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = +3

Query: 495 LICMSVGITAFXXXXXXXXXAGAITIXLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 674
           L   ++ IT+          AG + +  +DRNLNTSF+ P GGGDP+LYQHLF FFGHPE
Sbjct: 190 LFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPE 249

Query: 675 VYIL 686
           VYIL
Sbjct: 250 VYIL 253



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 68  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 241
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 242 NNIRFDSYPPPL 277
           NN  F   PP L
Sbjct: 105 NNFTFWLLPPAL 116



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 30/66 (45%), Positives = 34/66 (51%)
 Frame = +1

Query: 304 ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 483
           E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   S 
Sbjct: 126 EEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSL 185

Query: 484 DQLPLF 501
            Q+PLF
Sbjct: 186 YQMPLF 191


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 252 DLTPTPLPYIINFKKNCRKWCRNRMNS 332
           D T T   YIINFKKN   + R +++S
Sbjct: 510 DDTKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,744
Number of Sequences: 5004
Number of extensions: 51238
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)