Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40108
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    29   3.1  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    29   3.1  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    29   3.1  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 838 GWALKPGDPLNTPNCLVLAIKLFPKRPKGSFFVPLACGNNMRNYTQILVKLRI*TSGCPK 659
           GW  K   P  TP C+  +IKL   + K S F+   C  +   + + LV LRI  +G   
Sbjct: 386 GWEKKYKSP--TPWCI--SIKLTALQMKRSQFIKYICAEDEMTFKKWLVALRIAKNGAEL 441

Query: 658 NQN 650
            +N
Sbjct: 442 LEN 444


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 838 GWALKPGDPLNTPNCLVLAIKLFPKRPKGSFFVPLACGNNMRNYTQILVKLRI*TSGCPK 659
           GW  K   P  TP C+  +IKL   + K S F+   C  +   + + LV LRI  +G   
Sbjct: 403 GWEKKYKSP--TPWCI--SIKLTALQMKRSQFIKYICAEDEMTFKKWLVALRIAKNGAEL 458

Query: 658 NQN 650
            +N
Sbjct: 459 LEN 461


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 838 GWALKPGDPLNTPNCLVLAIKLFPKRPKGSFFVPLACGNNMRNYTQILVKLRI*TSGCPK 659
           GW  K   P  TP C+  +IKL   + K S F+   C  +   + + LV LRI  +G   
Sbjct: 515 GWEKKYKSP--TPWCI--SIKLTALQMKRSQFIKYICAEDEMTFKKWLVALRIAKNGAEL 570

Query: 658 NQN 650
            +N
Sbjct: 571 LEN 573


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 621  GGDPILYQHLF*FFGHPEVYILNFTRIW 704
            G DP L   LF  F H +++ ++F ++W
Sbjct: 1499 GPDPRLPDRLFGQFTHDQLFFMSFAQVW 1526


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 678 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 583
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 678 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 583
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,733,545
Number of Sequences: 27780
Number of extensions: 304017
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)