Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40108
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    29   2.9  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    29   2.9  
At2g20815.1 68415.m02449 expressed protein   contains Pfam profi...    28   6.7  

>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 839 GVGPQTRGPPKYPKLPGIGHKIIP*TPKRFLFCPSCLWK*Y 717
           G GP ++GPP+ P  PG+   + P +P  F   PS  W  Y
Sbjct: 259 GAGP-SQGPPQPPPSPGL---MFPLSPSGFFPMPSPRWNDY 295


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 839 GVGPQTRGPPKYPKLPGIGHKIIP*TPKRFLFCPSCLWK*Y 717
           G GP ++GPP+ P  PG+   + P +P  F   PS  W  Y
Sbjct: 366 GAGP-SQGPPQPPPSPGL---MFPLSPSGFFPMPSPRWNDY 402


>At2g20815.1 68415.m02449 expressed protein   contains Pfam profile:
           PF04484 family of unknown function (DUF566); expression
           supported by MPSS
          Length = 482

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 835 WALKPGDPLNTPNCLVLAIKLFPKRPKG 752
           WAL PG  L+T    V + KL P R KG
Sbjct: 218 WALSPGRSLDTQAVTVPSSKLKPPRGKG 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,549
Number of Sequences: 28952
Number of extensions: 271852
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)