Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40107
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.10 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   5.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   6.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.9  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 571 ATYAAAVLFRMSEDKPHDYKKRLSMELTNSLFRDDHQMWSNDFRYNPIYRTCSGQSRVTR 750
           A   +++L R+  D+  DY K L    T +L R  HQ  S+   Y    R+ S  S ++ 
Sbjct: 758 APMGSSILKRLGIDESVDYTKPLVDAQTMNLLRSYHQQQSH--HYGRRERSGSESSSISE 815

Query: 751 AC 756
            C
Sbjct: 816 RC 817


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 573 HVRCSRSVPHVRRQAPRLQEETLYGID*FVVP 668
           H+  S+S P V ++ P+L +   YG D    P
Sbjct: 275 HLTDSQSFPLVSQRVPQLAKNGAYGPDMIYTP 306


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 616 PHDYKKRLSME 648
           PHDY+KR  ME
Sbjct: 236 PHDYRKRFRME 246


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 600 AEQNGCSVRGDPFIS 556
           A  NGC +RG  F+S
Sbjct: 212 ANPNGCQIRGTFFVS 226


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 600 AEQNGCSVRGDPFIS 556
           A  NGC +RG  F+S
Sbjct: 219 ANPNGCQIRGTFFVS 233


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 192 LREHGAVHHLVR 227
           LRE G +HHL R
Sbjct: 360 LREEGWIHHLAR 371


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 806 RY-FKPXPLLVKGWSGPI 756
           RY ++P P+  + WSGP+
Sbjct: 257 RYCYRPYPVYNQWWSGPL 274


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 664 FRDDHQMWSNDFRYNPIYRTC 726
           +R++ Q W N  R+N     C
Sbjct: 120 YRENKQGWQNSIRHNLSLNKC 140


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 619 HDYKKRLSMELTNSLFRDDHQMWSNDFRYNPIYRTCSG 732
           H Y       L +S+    H    ND+  +P+Y T +G
Sbjct: 392 HQYGYNTLSPLPSSVH--SHSTIGNDYYNSPLYHTSAG 427


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 363 KKATTDNLSDSRTSFRYSCNCCSMRLKIFSAL 458
           K     ++      +RYSC  CS   K   +L
Sbjct: 271 KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 302


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 363 KKATTDNLSDSRTSFRYSCNCCSMRLKIFSAL 458
           K     ++      +RYSC  CS   K   +L
Sbjct: 29  KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 60


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 640 RVSSCNRGACLRTCGTER 587
           + S+ N+  CLRTC + +
Sbjct: 183 KASNGNKCCCLRTCSSAK 200


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 375 TDNLSDSRTSFRYSCNCCSMRLKIFSAL 458
           TD   D   + +++ NC  M+  +FS L
Sbjct: 51  TDQSLDEAQARKHTLNCHRMKPALFSVL 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,416
Number of Sequences: 336
Number of extensions: 4553
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)