Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40107
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 35 0.012
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.2
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 4.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.2
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 5.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 7.4
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 7.4
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.8
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 9.8
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 25 9.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 9.8
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 35.1 bits (77), Expect = 0.012
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 3 AICALRHLTSRHDDSEMAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
A ALR+L S E Q + LP +++LL+ S PL+ A V +RN+++ N
Sbjct: 271 AALALRNLAS----DERYQIEIVQSNALPSLLRLLRS-SYLPLILASVACIRNISIHPLN 325
Query: 183 YAPLREHGAVHHLVRLLMRAYND 251
+P+ + G + LV LL N+
Sbjct: 326 ESPIIDAGFLRPLVDLLSCTENE 348
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +2
Query: 323 IVEGAVGALHILAKESHNRQLIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVE---K 493
+ A GAL + NRQ + IP+ V LL + ++Q + +AV+ +
Sbjct: 183 VQRNATGALLNMTHSYENRQQLVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHR 242
Query: 494 EGAEMSKPK 520
+ S+PK
Sbjct: 243 KRLAQSEPK 251
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 661 LFRDDHQMWSNDFRYNPIYRTCSGQSRVTRACMGPDHPFTNKGYGLK 801
LF D++++ +ND Y+ ++ + ++T C G F ++ + +K
Sbjct: 88 LFADEYKVTANDKHYDYRLKSHRIKDKITTKCKGTTKYFNSRHFEIK 134
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 476 ELAVEKEGAEM-SKPKGQPLRSLNCCIQEMKGSPRTLQPFCSACPKTSPTITRRDS 640
EL EG+ SK P +CC QE K + +P C + K T + S
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTS 270
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 485 VEKEGAEMSKPKGQPLRSLNCCIQEMKGSPRTLQP 589
V KEG + S+ +GQ L ++N C+ TL P
Sbjct: 12 VLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGP 46
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 607 EDKPHDYK---KRLSMELTNSLFRDDHQMWSNDFRY 705
+++ HDY+ L S+F D+ +W DF Y
Sbjct: 708 DERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNY 743
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 369 LSLAKICKAPTAPSTISSIRTPSA 298
L+L K+ PT+PS+I + +P+A
Sbjct: 96 LNLKKVKSGPTSPSSIDRLSSPNA 119
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 51 MAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHH 218
MAQ +LHYG P + + +R + KA GL N + A L+ G + H
Sbjct: 1220 MAQIGGKLHYGHPDFLNAIYMTTRGGVSKAQKGLHVNEDI-YAGMTALQRGGRIKH 1274
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 113 SFSLASSEGRRGLSTQPGALFRQLRS 190
SFSLASS L G LF+Q+ S
Sbjct: 229 SFSLASSASSTNLGGSKGLLFQQMTS 254
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 488 EKEGAEMSKPKGQPLRSLNCCIQEMKGSPRTLQ 586
E+E E SK + +PL L Q+ K RT+Q
Sbjct: 74 EEEDFEYSKLQARPLTGLGISNQKPKSKVRTIQ 106
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 383 LIRQQNV-IPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMSKPKGQPLRSLNCCIQE 559
L+R + +PI + ++++ + A + G E P L+ + CI
Sbjct: 486 LLRSSGITVPISIDTYYSKVAKLAIEAGANIINDVTGGMGDEKMLPLAASLQ-VPICIMH 544
Query: 560 MKGSPRTLQ 586
M+G+P T++
Sbjct: 545 MRGTPETMK 553
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 561 IS*MQQFSERSGCPFGFD 508
+S +Q+F E++GCPF D
Sbjct: 296 VSLVQEFYEKAGCPFDRD 313
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 685 WSNDFR-YNPIYRTCSGQSRVTRACMGPDHPF 777
WS F Y + C+G S R GP HP+
Sbjct: 218 WSLGFETYYGVLTKCAGASLGMRLHSGPSHPY 249
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 615 LVFGHAEQNGCSVRGDPFIS*MQQFSERSGCPFGFDISAPSFSTANS 475
L+ GHA +N S++ PF ++ S+ S G IS F +NS
Sbjct: 613 LLGGHASENDKSLKQSPFQKLTRRLSDLSVNSSG-QISKQDFDNSNS 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,823
Number of Sequences: 5004
Number of extensions: 74218
Number of successful extensions: 238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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