Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40107
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31372| Best HMM Match : Arm (HMM E-Value=0)                        105   6e-23
SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)                   35   0.091
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.091
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)                   32   0.49 
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                32   0.64 
SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)                     31   0.85 
SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)                     29   4.5  
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  29   6.0  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               28   7.9  
SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.9  

>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
          Length = 656

 Score =  105 bits (251), Expect = 6e-23
 Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 2/82 (2%)
 Frame = +2

Query: 302 DGVRMEEIVEGAVGALHILAKESHNRQLIRQQNVIPIFVQLLFNEIENIQRVAAGVLCEL 481
           DGVRM++IVEG VGALHILA+E+HNR +IR  + I +FVQLL++  ENIQRVAAGVLCEL
Sbjct: 463 DGVRMDDIVEGTVGALHILAREAHNRAVIRSLHCISLFVQLLYSPNENIQRVAAGVLCEL 522

Query: 482 AVEKEGAEMSKPKG--QPLRSL 541
           A +KEGAE  + +   QPL  L
Sbjct: 523 AQDKEGAEAIEAENATQPLTDL 544



 Score = 97.9 bits (233), Expect = 9e-21
 Identities = 45/56 (80%), Positives = 51/56 (91%)
 Frame = +1

Query: 508 VEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPHDYKKRLSMELTNSLFRDD 675
           +EAE AT PLT+LLHSRNEG+A YAAAVLFRMSEDK  DYKKRLS+ELT+SLFR+D
Sbjct: 532 IEAENATQPLTDLLHSRNEGIAAYAAAVLFRMSEDKSQDYKKRLSVELTSSLFRED 587


>SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)
          Length = 771

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 344 ALHILAKESHNRQ-LIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMSKPK 520
           AL +LA ++ N++ ++   N + +  +L  +E +++++ AAGVL E+  ++         
Sbjct: 531 ALWVLAFDNENKEAILTTPNAVELLKELQHSEDDSVKKAAAGVLWEIEGKESHTVKESTA 590

Query: 521 GQPLRS 538
            +PLR+
Sbjct: 591 DEPLRN 596


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 23/59 (38%), Positives = 38/59 (64%)
 Frame = +3

Query: 57   QNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYAPLREHGAVHHLVRLL 233
            ++AVR   GLP++V+LL+  +  P+V+AV   +RNLA+   N   + ++ A+  LVR L
Sbjct: 1501 RSAVRKDKGLPILVELLRIDND-PVVRAVATCLRNLAIDPRNKDLIGKY-AMRDLVRRL 1557


>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
          Length = 841

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 9   CALRHLTSRHDDSEMAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSANYA 188
           C L  L  +   S    N + +  GL  I++++  P      +A++ +    +   A + 
Sbjct: 498 CRLLALLVKQGQSTEISNKMIMAGGLSSIIEVISSPKNVVQNEALIAMTVMASTVKAEFY 557

Query: 189 P-LREHGAVHHLVRLL 233
           P LRE G +H L++L+
Sbjct: 558 PKLRETGLMHQLIKLI 573


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +3

Query: 420  NCCSMRLKIFSALPPACSVNWP*RKKEQKCRSRRGNRSAH*IAAFKK*RGRHVRCSRSVP 599
            +CC   +K +  +     V W   ++ +  +  RGNR  + I   K  R    R  R  P
Sbjct: 1369 DCCPQWVKSYKVMYSKDGVQWKWYRRGRSVKVFRGNRDKNTIVKNKFRRALLCRYVRIHP 1428

Query: 600  HVRRQAPRLQEETLYGI 650
            H  R    L+ E LYGI
Sbjct: 1429 HTWRGTIALRAE-LYGI 1444


>SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)
          Length = 317

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 421 LHEYRNDVLLSDKLSVVAFFG*NMQGSNGAF--HDLLHTNAVSVSSIGSTARRAALSLVS 248
           +H Y+ND LL+   + VA +G      NG    H+ L+  +V++ S+G  A R    +++
Sbjct: 53  VHWYKNDTLLNTSSAGVAIYGDTFTILNGQHKDHEGLYRCSVALPSLGYNASRLVTLIIT 112


>SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)
          Length = 590

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 126 PLVKAVVGLVRNLALCSANYAPLR-----EHGAVHHLVRL 230
           P++  +VG   N    S N+ P R     +HGA+ HLV++
Sbjct: 101 PVLPCLVGWASNHVFASVNHLPARVKTTKKHGAIRHLVQV 140


>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +3

Query: 3   AICALRHLTSRHDDSEMAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
           AIC    + +  D  EM ++ V    GL +IV LL+   +  ++ +V   + N+A    N
Sbjct: 563 AICPC--IENAKDAGEMVRSFVG---GLELIVSLLKSNDQ-EVLASVCAAIANIAKDEEN 616

Query: 183 YAPLREHGAVHHLVRL 230
            A + +HG V  L +L
Sbjct: 617 LAVITDHGVVPMLAKL 632


>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 614 LSSDMRNRTAAAYVATPSFLECSNSVSGAVAPSASTFLLLLSLR 483
           L +     T    +A  SF   S SVSG VAP   T L  +++R
Sbjct: 307 LKTHFGKETPGEIIANQSFARNSISVSGFVAPPLRTLLFTVTIR 350


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 417 CNCCSMRLKIFSALPPACSVNW 482
           CN C + +K +S LPP    NW
Sbjct: 222 CNACVLLVKRWSKLPPGTEKNW 243


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 302  DGVRMEEIVEGAVGALHILA 361
            DG+R ++IV+ AVGALH LA
Sbjct: 1727 DGLRGKKIVDVAVGALHCLA 1746


>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 74  ALWIAGDREAATASFSLASSEGRRGLSTQPGALFRQLRSVAGTRRRSSSGAPADA 238
           ALWI G+   +         E R+GL   P  +  ++R  AG +  +   APA +
Sbjct: 159 ALWILGEYADSKEDIMTVMEEIRKGLGDMP-IVDDEMRKAAGDQGEAGEEAPASS 212


>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 126 PLVKAVVGLVRNLALCSANYAPLR-----EHGAVHHLVRL 230
           P++  +VG   N    S N+ P R     +HGA+ HLV++
Sbjct: 250 PVLPCLVGGASNHVFASVNHLPARVKTTKKHGAIRHLVQV 289


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +2

Query: 77  LWIAGDREAATASF--SLASSEGRRGLST-QPGALFRQLRSVAGTRRRSSSGAPADACLQ 247
           LW  GD +     +  S A +   R L+T Q   L R+ +S+         G  A     
Sbjct: 177 LWSRGDEDRQWPRYYNSHALTHDGRYLNTEQTNPLPRRSKSLTSFNDDGDYGLAAFPIAN 236

Query: 248 RHQRQ--RSSSGGGANTAYADGVRMEEIVEGAVGALHILAK 364
           R Q    RSS+G G ++  A+GV      E A+ +  ++ K
Sbjct: 237 RTQDDSVRSSNGSGRSSVQANGVLARSKSERAIESEDVVCK 277


>SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 213 ERRRVPATERSWRNRAPGCVLSPRRPSLEASEKEAVAASRSPAIHNAGALHSAPSHCRHV 34
           +R  +P    S RN     +L       E+ +   V +S+SP    A  +HS+ S C  V
Sbjct: 141 QRSMLPQRRNSGRNSKYKVILLSSFSRTESHQSTPVHSSKSPCSRVACQVHSSKSPCTRV 200


>SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 359

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 396 RTSFRYSCNCCSMRLKIFSALPPACS 473
           R  FR +C CC  + +++  L  ACS
Sbjct: 309 REGFRRACGCCRRQHRVYPGLLVACS 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,318,407
Number of Sequences: 59808
Number of extensions: 648488
Number of successful extensions: 2201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)