Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40107
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 58 1e-08
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 58 1e-08
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 32 0.57
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 32 0.57
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 30 1.7
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 3.0
Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL032623-18|CAN99758.1| 330|Caenorhabditis elegans Hypothetical... 29 4.0
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 28 7.0
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 28 7.0
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 28 7.0
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 7.0
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 7.0
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = +3
Query: 3 AICALRHLTSRHDDSEMAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
A+CALRH T+RH +E AQ+ +R PVI+ L+ R P++KA +G++RN AL N
Sbjct: 394 ALCALRHCTARHSLAEEAQSELRFCQAFPVILDQLE-TLRTPVIKAALGVIRNSALLQTN 452
Query: 183 YAPLRE------HGAVHHLVRLLMRAYNDTRDN 263
L + H AV + +L RA +N
Sbjct: 453 LIELTQEQTANGHTAVSLTMDILRRAITAIEEN 485
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 302 DGVRMEEIVEGAVGALHILA 361
DGV M ++EGAV ALH LA
Sbjct: 491 DGVPMWGVIEGAVSALHQLA 510
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = +3
Query: 3 AICALRHLTSRHDDSEMAQNAVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
A+CALRH T+RH +E AQ+ +R PVI+ L+ R P++KA +G++RN AL N
Sbjct: 394 ALCALRHCTARHSLAEEAQSELRFCQAFPVILDQLE-TLRTPVIKAALGVIRNSALLQTN 452
Query: 183 YAPLRE------HGAVHHLVRLLMRAYNDTRDN 263
L + H AV + +L RA +N
Sbjct: 453 LIELTQEQTANGHTAVSLTMDILRRAITAIEEN 485
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 302 DGVRMEEIVEGAVGALHILA 361
DGV M ++EGAV ALH LA
Sbjct: 491 DGVPMWGVIEGAVSALHQLA 510
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 63 AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
AVR+ GLPV+V+L++ P + +V AV +RNLA+ N
Sbjct: 841 AVRVEKGLPVLVELIRLPEDF-VVCAVATALRNLAIDPRN 879
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 63 AVRLHYGLPVIVKLLQPPSRWPLVKAVVGLVRNLALCSAN 182
AVR+ GLPV+V+L++ P + +V AV +RNLA+ N
Sbjct: 1011 AVRVEKGLPVLVELIRLPEDF-VVCAVATALRNLAIDPRN 1049
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -3
Query: 460 GNALNIFNLIEQQLHEYRNDVLLSDKLSVVAF 365
G ++N+F+LIE+ L Y+ D++LS L + +
Sbjct: 3195 GASMNVFHLIERLLDYYQYDLILSKNLVAIKY 3226
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -3
Query: 460 GNALNIFNLIEQQLHEYRNDVLLSDKLSVVAF 365
G ++N+F+LIE+ L Y+ D++LS L + +
Sbjct: 3197 GASMNVFHLIERLLDYYQYDLILSKNLVAIKY 3228
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 237 ASAGAPDDERRRVPATERSWRNRAPGCVLSPRRPSLEASEKEAVAASRSP 88
ASA APD ++ + PA + S PG S PS +E + SP
Sbjct: 88 ASATAPDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISP 137
>Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical
protein F09A5.4b protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 173 FRQLRSVAGTRRRSSSGAPADACLQRHQRQRSS 271
FRQL S RR SSG P D LQ+ +Q S+
Sbjct: 25 FRQLFSSCSFMRRKSSGVPIDDKLQQLHQQFST 57
>AL032623-18|CAN99758.1| 330|Caenorhabditis elegans Hypothetical
protein Y43F8B.15 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 559 NEGVATYAAAVLFRMSEDKPHDYKKRLSMELTNSLFRDDHQMWSNDFRYNPIYRTC 726
NE + T A LF + + PHDY KR+ + TN D Q + ++ + R C
Sbjct: 104 NEVIITTFHA-LFDLKKQHPHDYWKRIILYHTNDFTPTDEQ-FKRLYKIKALNRWC 157
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 356 LAKESHNRQLIRQQNVIPIFVQLLFNE 436
L +ES L+ ++NVIP+ +L+F+E
Sbjct: 122 LREESRRMDLVDKENVIPVIPRLVFDE 148
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 356 LAKESHNRQLIRQQNVIPIFVQLLFNE 436
L +ES L+ ++NVIP+ +L+F+E
Sbjct: 122 LREESRRMDLVDKENVIPVIPRLVFDE 148
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 71 PALWIAGDREAATASFSLASSEGRRGLSTQPGALFRQLRSVAGT---RRRSSSGAPADAC 241
P ++ +++A+ S SE + PG + R+ SV RRR+S + +
Sbjct: 122 PQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDKRRRRASFSSTSIQS 181
Query: 242 LQRHQRQRSSSGGGANTAYADGVRMEEIVE 331
QR SSS ++++ ++ EE +
Sbjct: 182 SPERQRDVSSSSRTSSSSSTSSMKQEETAD 211
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 71 PALWIAGDREAATASFSLASSEGRRGLSTQPGALFRQLRSVAGT---RRRSSSGAPADAC 241
P ++ +++A+ S SE + PG + R+ SV RRR+S + +
Sbjct: 893 PQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDKRRRRASFSSTSIQS 952
Query: 242 LQRHQRQRSSSGGGANTAYADGVRMEEIVE 331
QR SSS ++++ ++ EE +
Sbjct: 953 SPERQRDVSSSSRTSSSSSTSSMKQEETAD 982
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 71 PALWIAGDREAATASFSLASSEGRRGLSTQPGALFRQLRSVAGT---RRRSSSGAPADAC 241
P ++ +++A+ S SE + PG + R+ SV RRR+S + +
Sbjct: 890 PQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDKRRRRASFSSTSIQS 949
Query: 242 LQRHQRQRSSSGGGANTAYADGVRMEEIVE 331
QR SSS ++++ ++ EE +
Sbjct: 950 SPERQRDVSSSSRTSSSSSTSSMKQEETAD 979
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,383,816
Number of Sequences: 27780
Number of extensions: 461067
Number of successful extensions: 1539
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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