Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40106
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    31   0.26 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.5  

>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -3

Query: 359 DLSCHIVSKMIPRFNILATQFGDRFNLL*MFIASNMF*SLCLINQILPVIPIYLIKIHHL 180
           +L C +   +I   + L T + +  N+L +   S  F  LCL   ILP + I L  I  +
Sbjct: 167 ELKCQLADIVIENNSDLETLYENIHNVLPLITPSYFFTLLCL---ILPPLQITLQVIAFV 223

Query: 179 TKKNKISQ 156
           ++K K+S+
Sbjct: 224 SQKKKVSE 231


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 163 YHRTFN--YLREIYVPLEISDHRVL 95
           +HR+FN   +R IYVPL  S+H +L
Sbjct: 431 WHRSFNRWLIRYIYVPLGGSNHSIL 455


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +1

Query: 553  NLVIYIF--KLSINFWTILVYGMALK---NSLETRVW 648
            N+VI+ F  ++ IN+W  + YG A +   N+  T +W
Sbjct: 2142 NIVIWFFISQILINYWLAVPYGQAWRFFWNTSNTPLW 2178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,471
Number of Sequences: 5004
Number of extensions: 70955
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)