Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40106
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 272 MFIASNMF*SLCLINQILPVIPIYLIKI--HHLTKKN 168
           +FIA N      L N+ L ++PI+L  +    LT++N
Sbjct: 130 IFIAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQN 166


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 272 MFIASNMF*SLCLINQILPVIPIYLIKI--HHLTKKN 168
           +FIA N      L N+ L ++PI+L  +    LT++N
Sbjct: 168 IFIAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQN 204


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 590 FGQFWCMGWL*KIAW 634
           FG  WC  WL    W
Sbjct: 133 FGDLWCSIWLAVDVW 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,897
Number of Sequences: 438
Number of extensions: 4921
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)