Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40104
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 77 4e-15
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 44 4e-05
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 31 0.21
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 29 0.84
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 3.4
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 7.8
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 7.8
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 76.6 bits (180), Expect = 4e-15
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +3
Query: 489 QRRRS*IIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDKMRKQAFA 665
Q RS +P+F+E FDPENYS+W +Y YPE+L + VFM+ NLI G FQRL+ RK F
Sbjct: 275 QDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFG 334
Query: 666 SVCLFGEDNN 695
+ GE+ +
Sbjct: 335 CCVVIGENGD 344
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +2
Query: 2 QNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLI 181
Q + A++ + D L ++T+LV R+TLAD+ L +VL S +
Sbjct: 124 QAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYT 183
Query: 182 NVQRWFLTVAHQPQVSAV 235
++ R++ T+ HQ ++ A+
Sbjct: 184 HIYRYYQTIYHQAKLDAI 201
Score = 32.7 bits (71), Expect = 0.068
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +1
Query: 439 SMPKGTFNMDDFKRVYSNED 498
S P G+F+++++KRVYSN+D
Sbjct: 257 SAPNGSFDIEEYKRVYSNQD 276
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 38 ALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQ 217
+LK+ + + RT+LV +R TLAD+ S L F ++D R L ++ R+++T+ HQ
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQ 200
Query: 218 PQV 226
++
Sbjct: 201 AKL 203
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 31.1 bits (67), Expect = 0.21
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 50 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 226
LD L + TF+ + I++AD+ V++ + H++ L L NV RWF + HQ V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.84
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 520 SGRSLTPRTIPFGMPNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 678
SGR + R + + PN L+ R VTL VC RG + +NR+ C
Sbjct: 163 SGRKIQ-RPVAYN-PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 27 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 119
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 436 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 329
RRGPWTP ++ + +L +++ L +H L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 781 GIRSPTSNQTTAGTRALFRATPTLRRWW 698
G S T++ TT+ + A ATPT + WW
Sbjct: 638 GTTSGTASSTTSSSVA--SATPTHKHWW 663
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 781 GIRSPTSNQTTAGTRALFRATPTLRRWW 698
G S T++ TT+ + A ATPT + WW
Sbjct: 638 GTTSGTASSTTSSSVA--SATPTHKHWW 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,148
Number of Sequences: 5004
Number of extensions: 72118
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -