Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40104
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 64 2e-10
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 54 1e-07
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 44 2e-04
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.003
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.095
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 1.5
07_03_0817 - 21735283-21735358,21735719-21735796,21735885-217359... 29 3.6
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 6.2
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 6.2
03_03_0142 + 14800317-14801240 29 6.2
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 63.7 bits (148), Expect = 2e-10
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 519 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNF 698
FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G + F
Sbjct: 299 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPF 358
Score = 63.7 bits (148), Expect = 2e-10
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 519 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNF 698
FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G + F
Sbjct: 864 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPF 923
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +2
Query: 11 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 190
E A + L +L L+ HL + T+LV +TLAD+++ L F ++ S S +V+
Sbjct: 137 EAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVE 196
Query: 191 RWFLTVAHQPQVSAVVG 241
R+F T+ +QP V+G
Sbjct: 197 RYFWTMVNQPNFKKVLG 213
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 11 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 190
E A + L +L L+ HL + T+LV +TLAD+++ L F ++ + S +V+
Sbjct: 698 EAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVE 757
Query: 191 RWFLTVAHQPQVSAVVG 241
R+F T+ +QP V+G
Sbjct: 758 RYFWTMVNQPNFKKVMG 774
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +2
Query: 11 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 190
E A + L +L L+ HL + T+LV +TLAD+++ L + F +L S S +V+
Sbjct: 152 EFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVE 211
Query: 191 RWFLTVAHQPQVSAVVG 241
R+F T+ +QP V+G
Sbjct: 212 RYFWTMVNQPNFKKVIG 228
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 519 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNF 698
FW+ +DPE YS+W+ +YKY +E F++ N +R+D RK AF + + G F
Sbjct: 316 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMN------KRMDLCRKYAFGKMLVIGSTPPF 369
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 23 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 202
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 203 TVA 211
++A
Sbjct: 153 SIA 155
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 23 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 199
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 34.7 bits (76), Expect = 0.095
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 11 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 133
+ A +L AAL L+ HL +L + +TLADV +F+TL+
Sbjct: 257 DAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLV 297
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 11 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHV 151
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHM 159
>07_03_0817 -
21735283-21735358,21735719-21735796,21735885-21735945,
21736038-21736069,21736144-21736221,21738046-21738213,
21738711-21738897,21740019-21740160
Length = 273
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -1
Query: 843 KLDQSFLGQPRSKDPSFFQS*EFVVPPPIRRQREHELFSAP----HPHSGDGGNCCLH 682
KLD+ G ++ + S +V PPI + F P +PHSG GG +H
Sbjct: 144 KLDEKDAGAAKNPEVETSSSIHSLVYPPIAPLGHDDAFPGPGAGFYPHSGIGGGGSMH 201
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 66 SHAPSLLPRESHLPMSLSS 122
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 445 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 287
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 436 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 287
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,059,336
Number of Sequences: 37544
Number of extensions: 559207
Number of successful extensions: 1551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -