Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40104
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  92   5e-19
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 38   0.014
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   3.6  
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               29   6.3  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   8.4  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
 Frame = +3

Query: 510 IPYFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFG 683
           IPYFWE FD E YS+W+ EYK  Y ++L  VFM+CNL+ GM QRL+K+ K  F S+C+FG
Sbjct: 22  IPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGGMIQRLEKLVKNGFGSICIFG 81

Query: 684 EDNN 695
           E++N
Sbjct: 82  ENHN 85


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +2

Query: 2   QNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 130
           Q+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 103 QSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 2   QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSS 175
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T +      L    R  
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATSIAVILTSLGDEDRKP 170

Query: 176 LINVQRWF 199
             N+  W+
Sbjct: 171 YQNIVSWY 178


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 850 KKKTGPKFLGTTSLEGSQFLPVLGIRSPTSNQTTAGTRALFRAT 719
           ++K G  ++G+ S   +  L  +   +PT NQTT  TRAL RA+
Sbjct: 95  EEKAGSVYIGSKSHHVNPILARMMDLAPT-NQTTLATRALARAS 137


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 70   THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 201
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,693,731
Number of Sequences: 59808
Number of extensions: 600989
Number of successful extensions: 1679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)