Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40104
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    62   3e-10
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ...    62   3e-10
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do...    36   0.034
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    34   0.14 
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id...    32   0.42 
At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive de...    32   0.56 
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    29   5.2  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    29   5.2  
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ...    29   5.2  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    29   5.2  
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)...    28   6.9  
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta...    28   9.1  

>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +3

Query: 519 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNF 698
           FW+ +DPE YS+W+ +YKY +E    F++ N + G  QR+D  RK +F  + + G +  F
Sbjct: 289 FWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPF 348



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/77 (36%), Positives = 43/77 (55%)
 Frame = +2

Query: 11  ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 190
           E A S L   L+ L+ HL + TFLV   +TLAD++    L   F  V+     S+  +V+
Sbjct: 128 EAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVE 187

Query: 191 RWFLTVAHQPQVSAVVG 241
           R+F T+ +QP+   V+G
Sbjct: 188 RYFWTMVNQPEFKKVLG 204


>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative Similar to elongation factor
           1-gamma (gb|EF1G_XENLA). ESTs
           gb|T20564,gb|T45940,gb|T04527 come from this gene
          Length = 414

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +3

Query: 519 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNF 698
           FW+ +DPE YS+W+ +YKY +E    F++ N + G  QR+D  RK +F  + + G +  F
Sbjct: 290 FWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPF 349



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 31/77 (40%), Positives = 42/77 (54%)
 Frame = +2

Query: 11  ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 190
           E A S L  AL  L+ HL + T+LV   ITLAD+I    L   F  V+     S   +V+
Sbjct: 128 EGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVE 187

Query: 191 RWFLTVAHQPQVSAVVG 241
           R+F TV +QP  + V+G
Sbjct: 188 RYFWTVVNQPNFTKVLG 204


>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
           domain-containing protein contains Pfam domain PF00043:
           Glutathione S-transferase, C-terminal domain
          Length = 399

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +2

Query: 17  AKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 133
           A ++L + L  ++ HL +  +L  ER+TLADV +F+TL+
Sbjct: 268 AVNELFSTLDEIEDHLGSNRYLCGERLTLADVCLFTTLI 306


>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +2

Query: 35  AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAH 214
           + LK LD HLLTR+++   + +  D+ VF+         L     S  +NV RWF  +  
Sbjct: 11  SGLKKLDEHLLTRSYITGYQASKDDITVFT--------ALSKPPTSEFVNVSRWFNHIDA 62

Query: 215 QPQVSAV 235
             ++S V
Sbjct: 63  LLRISGV 69


>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
           identical to SP|P48006 Elongation factor 1-beta
           (EF-1-beta) {Arabidopsis thaliana}
          Length = 231

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 35  AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAH 214
           A LK LD HLLTR+++   + +  D+ VF+ L         P+  S  +N  RW+  +  
Sbjct: 11  AGLKKLDEHLLTRSYITGYQASKDDITVFAAL------AKPPT--SQYVNASRWYNHIDA 62

Query: 215 QPQVSAV 235
             ++S V
Sbjct: 63  LLRISGV 69


>At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive
           dehalogenase-related contains similarity to
           tetrachloro-p-hydroquinone reductive dehalogenase
           GI:148689 from [Flavobacterium sp.]
          Length = 266

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +2

Query: 8   VERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINV 187
           + R+K  LL  L  ++  L   T+L     ++ADV++   L       L+    SS  N+
Sbjct: 161 LRRSKDHLLRLLDEVETKLEGTTYLAGNEFSMADVMLIPVLARLSLLDLEEEYISSRKNL 220

Query: 188 QRWFLTVAHQPQVSAVVG 241
             ++  V  +P    V+G
Sbjct: 221 AEYWALVRRRPSYKKVIG 238


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
 Frame = +3

Query: 12  NVQSLTYWPP*-------KYWTDIFSHAPSLLPRESHLPMSLSSVHCCML 140
           NV S+T  PP        ++    F   PS L RE  LPMSL     CML
Sbjct: 344 NVPSVTVGPPGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCML 393


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 472 FKRVYSNEDEAKLFLTSGRSLTPRTI 549
           FKR YS+    KLF++S +SL P ++
Sbjct: 826 FKRFYSSLTGKKLFVSSSKSLDPNSV 851


>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
           similar to myb protein cY13 GI:928930 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00249 myb
           DNA-binding domain; identical to cDNA cY13 gene
           GI:928929
          Length = 330

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -3

Query: 436 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPGTF*GRM* 266
           ++GPWTP       +   +Q  P +W ++  +T  L C  SC +   + L PG   G   
Sbjct: 13  KKGPWTP-EEDIILVSYIQQHGPGNWRSVPANTGLLRCSKSCRLRWTNYLRPGIKRGNF- 70

Query: 265 EEPQER 248
            +P+E+
Sbjct: 71  TQPEEK 76


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 183 FISDERTLGSSTCWKACSSVLKTMTSASVILSVTRKVRVRRCPS 52
           F+ ++      +C K CSS LKT+ S   + S  ++    +C S
Sbjct: 156 FVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCVS 199


>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
           identical to myb-like protein GB:AJ007289 [Arabidopsis
           thaliana] (Plant J. 20 (1), 57-66 (1999))
          Length = 323

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 436 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPGTF*GRM* 266
           ++GPWTP          QE   P +W A+  +T  L C  SC +   + L PG   G   
Sbjct: 13  KKGPWTPEEDIILVTYIQEH-GPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71

Query: 265 EEPQE 251
           E  ++
Sbjct: 72  EHEEK 76


>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
           glutamyl-tRNA synthetase, putatuve / GluRS, putative
           identical to gi:3435196
          Length = 719

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 50  LDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTV 208
           +D +L + TFLV   +++ADV ++S L    Q            ++ RWF ++
Sbjct: 104 VDKYLESSTFLVGHSLSIADVAIWSALAGTGQRWESLRKSKKYQSLVRWFNSI 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,660,696
Number of Sequences: 28952
Number of extensions: 417312
Number of successful extensions: 1098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)