Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40103
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 125 4e-30
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 125 4e-30
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.014
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 3.8
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.0
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 6.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.6
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 8.7
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 125 bits (301), Expect = 4e-30
Identities = 56/78 (71%), Positives = 67/78 (85%)
Frame = +3
Query: 30 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 209
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 210 EEEVEKIITIMSNPRSIR 263
EE+E+I+TI+ NP +
Sbjct: 61 TEELERIVTIIQNPSQFK 78
Score = 98.3 bits (234), Expect = 6e-22
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 254 EYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 433
++KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH
Sbjct: 76 QFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 125 bits (301), Expect = 4e-30
Identities = 56/78 (71%), Positives = 67/78 (85%)
Frame = +3
Query: 30 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 209
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 210 EEEVEKIITIMSNPRSIR 263
EE+E+I+TI+ NP +
Sbjct: 61 TEELERIVTIIQNPSQFK 78
Score = 98.3 bits (234), Expect = 6e-22
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 254 EYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 433
++KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH
Sbjct: 76 QFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 33.9 bits (74), Expect = 0.014
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 356 DLERLKKIRAHRGMRHYWGLRVRGQH 433
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 242 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 132
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 359 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 258
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 93 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 185
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 290 FAYLGTSLVSYTPRIRHDSDNFFNLFFCA 204
F Y + + TP IR+DS F +L A
Sbjct: 142 FLYTHSGMTHITPSIRNDSTKFLSLLINA 170
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 229 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 83
I SSS S A + +S+FL+ +L+ + TP N + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 325 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 468
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,049
Number of Sequences: 5004
Number of extensions: 43353
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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