Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40103
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              134   3e-32
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       28   3.9  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 28   5.1  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   5.1  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               27   6.8  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   6.8  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1)                   27   9.0  
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  134 bits (325), Expect = 3e-32
 Identities = 59/78 (75%), Positives = 73/78 (93%)
 Frame = +3

Query: 30  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 209
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 210 EEEVEKIITIMSNPRSIR 263
           E+EVE+++TIM NPR  +
Sbjct: 61  EDEVERVVTIMQNPRQYK 78



 Score =  116 bits (280), Expect = 9e-27
 Identities = 49/60 (81%), Positives = 56/60 (93%)
 Frame = +2

Query: 254 EYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 433
           +YKIPDWFLNRQKD  DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHYWGLRVRGQH
Sbjct: 76  QYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHYWGLRVRGQH 135


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = +3

Query: 30  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 131
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 260 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 388
           K PD  LN  KD  +GK    T+  + ++L  D ++ K  R+H
Sbjct: 661 KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260  KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 400
            K+  W L+     V+ KY +  S + + + LRE+LE +KK+R   G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 203 FASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVW----NDQ 36
           + +T+ + +    E  VG+   N F +R+R H  SF    +  ++  + K++W    ND 
Sbjct: 313 YQATVTRKDKNTSETYVGLTE-NAFKTRYRNHTASFR-HAKHRNSTELSKYIWSLKDNDI 370

Query: 35  RHF 27
            HF
Sbjct: 371 EHF 373


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 220 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 110
           T +++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 51  KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 230
           +F+H ++     +  KRK +     +       +NI   K DIDL    G CTE+E+ ++
Sbjct: 59  EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109

Query: 231 I 233
           +
Sbjct: 110 V 110


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 278 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 373
           L R+K + + KY +   +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +3

Query: 36   LVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEE 215
            + + D+F+H+  ++N ++  K+  +     +  +G+  ++I LK A  +  K     T E
Sbjct: 1073 VTMADRFEHLDTLLNLSMIHKKHSVQVAKYLFDIGKMTADIGLKMAAAEGLKLPKAKTPE 1132

Query: 216  EVEKIITIMSNPRSIRYQTGS*IGKRILL 302
            E  KI   M   R I       IG+ ILL
Sbjct: 1133 EKRKIQYAMHIGRHIMR-----IGREILL 1156


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 317 QLTSS--NLDSKLREDLERLKKI 379
           QLTS   N+D K+RE LE++KK+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKL 94


>SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1)
          Length = 242

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
 Frame = -3

Query: 311 IYHQQYPFAYLGTSLVSYTPRIRHDS------DNFFNLFFCAFASTLVKINVG---FFEN 159
           IY  +YP  Y  +  ++YT  +  DS      ++  ++   A  S L K +V     +E+
Sbjct: 111 IYRGRYPMDYSNSIPLNYTEEVLLDSNGERCVNSNESVNLLADLSGLHKSDVNTSVTYED 170

Query: 158 NVGVPPANTFDSRHRKHNLSF-AIDVRIHDTKNMLKF 51
             G+     F   +   N+ F A+D R  + KNM+ +
Sbjct: 171 QRGLKRVVKFSGENASVNIDFDAVDTRSIELKNMVSY 207


>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 356 LHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSYTPR-------IRHDSDNFFN 219
           L+GV+     + AGC++    P   +   L+ Y+P+       I HD  NF N
Sbjct: 130 LYGVMAMRGVKFAGCVHFPPVPGCEIKVLLLIYSPKKRAFVGLIPHDQGNFVN 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,413
Number of Sequences: 59808
Number of extensions: 316278
Number of successful extensions: 884
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)