Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40102
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 89 3e-19
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 88 6e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 85 7e-18
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 1.6
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 1.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 2.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.6
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 4.7
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 25 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 89.0 bits (211), Expect = 3e-19
Identities = 38/63 (60%), Positives = 56/63 (88%)
Frame = +3
Query: 66 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 245
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 246 KLS 254
KLS
Sbjct: 61 KLS 63
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 88.2 bits (209), Expect = 6e-19
Identities = 37/63 (58%), Positives = 55/63 (87%)
Frame = +3
Query: 66 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 245
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 246 KLS 254
KL+
Sbjct: 61 KLA 63
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 84.6 bits (200), Expect = 7e-18
Identities = 35/63 (55%), Positives = 55/63 (87%)
Frame = +3
Query: 66 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 245
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 246 KLS 254
KL+
Sbjct: 61 KLA 63
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 202 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 74
SSV T LS S S+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 25.8 bits (54), Expect = 3.6
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -1
Query: 274 SASYWHCDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 95
S+S SF+ PA+ S TSL SS S S S + + + S+S+A+ P S+
Sbjct: 62 SSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSS 117
Query: 94 ASKYA 80
+S +A
Sbjct: 118 SSSHA 122
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 274 SASYWHCDSFSRPAAISCSTSLPLSSVITF 185
S WHC+ P + +P S +ITF
Sbjct: 460 SLKLWHCNEAIPPTLLCTCRQVPTSPIITF 489
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 217 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 83
+ L + S T +S S S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 63 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 224
K+R + + L ++T + E+ + G+E+ G+K K ++ E NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 217 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 74
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 232 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 89
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.6
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +1
Query: 61 KKCVTWPRIYWLCWV 105
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 61 KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 207
KK + + +I W WV R +P S PS S L SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 250 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 92
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 180 LKKVITEL-NGK-DVEQLIAAGREKLSQCQ 263
LKK+ EL NG D+E+LIA +LS+C+
Sbjct: 208 LKKLAQELSNGNGDLEKLIAETNTELSRCR 237
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 238 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 74
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,193
Number of Sequences: 5004
Number of extensions: 22907
Number of successful extensions: 88
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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