Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40099
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    97   3e-21
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.3  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   4.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   5.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   7.6  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   7.6  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 43/85 (50%), Positives = 63/85 (74%)
 Frame = +3

Query: 252 QLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYR 431
           +LY++LIT   SNIL+D++TL L S+VV   C  L E E+L  AF +  AFDE  +LGYR
Sbjct: 63  ELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYR 122

Query: 432 ESVNLAQVRSFVEMDSHEEKIYQAV 506
           ++V+L Q+++++EM+SHEEKI + V
Sbjct: 123 DNVSLTQIKTYLEMESHEEKIQEIV 147



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 31/62 (50%), Positives = 50/62 (80%)
 Frame = +1

Query: 67  MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 246
           MV++A ++  + GKA++SRQF EM++ R+E LL++FP L++   Q+T VE+++VR+VYQP
Sbjct: 1   MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQP 60

Query: 247 LD 252
           LD
Sbjct: 61  LD 62


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 791 CRNREHERSPVCAAAAELHGRTTQLYEYLWPVSLEIFSAIDSDGDDETSSSY 636
           C + +  + P  +A + L   TT   + LW   L   S  D+  D+  SS+Y
Sbjct: 87  CNSSKERQLPALSALSALSTLTTSANDDLWTARLIWQSTNDTKLDNSPSSNY 138


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 791 CRNREHERSPVCAAAAELHGRTTQLYEYLWPVSLEIFSAIDSDGDDETSSSY 636
           C + +  + P  +A + L   TT   + LW   L   S  D+  D+  SS+Y
Sbjct: 87  CNSSKERQLPALSALSALSTLTTSANDDLWTARLIWQSTNDTKLDNSPSSNY 138


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 794 GCRNREHERSPVCAAAAELHGRTTQLYEYLWPVS 693
           G + R H  SP  AAAA + G    + E+   VS
Sbjct: 450 GAKGRTHLVSPAMAAAAAIKGHLCNVREFFGDVS 483


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 683 FSAIDSDGDDETSSSYQSHCRXTSVSAA 600
           + A+ SD DD+ S++ Q H + ++++ A
Sbjct: 190 YGAVISDSDDDESNTEQDHSKESNLNTA 217


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 355 SCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIYN 254
           SC      + L S+N + +SR LLA +V  +I N
Sbjct: 134 SCDSNENLSTLSSVNQNFNSRQLLATIVPESIQN 167


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -2

Query: 824 NXRGPLTLTLGCRNREHER---SPVCAAAAELHGRTTQLYEYLWPVSLEIFSAIDSDGDD 654
           N  GP   T G    +HE    SP+       H RT +L E L P+ L   + ++    D
Sbjct: 208 NLNGPHA-TAGENGEDHEEATASPLDENIDYTHSRTLELLEQLQPLILNETTFVEPFSID 266

Query: 653 ETSSSYQSHCR 621
             S    +H R
Sbjct: 267 RESHRVITHPR 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,090
Number of Sequences: 5004
Number of extensions: 70459
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)