Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40099
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 103 2e-22
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 98 9e-21
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 98 9e-21
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 97 1e-20
02_05_0615 - 30364956-30365729,30365813-30366286 31 1.5
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 29 4.6
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 29 4.6
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 29 6.1
08_02_0986 + 23328056-23328145,23328289-23329227,23329313-233295... 28 8.1
03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811 28 8.1
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 103 bits (247), Expect = 2e-22
Identities = 52/105 (49%), Positives = 70/105 (66%)
Frame = +3
Query: 204 YICRNRVRQICLPATRQLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQA 383
Y+ VR + P LY+LLIT K SNILEDL+TLRL S++VPEY L E V A
Sbjct: 333 YVETENVRYVYQPI-EGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTA 391
Query: 384 FNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRGPK 518
F L+FAFDE ++LG +E+V + QV+ + EM+SHEEK ++ + K
Sbjct: 392 FELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSK 436
Score = 101 bits (241), Expect = 9e-22
Identities = 45/63 (71%), Positives = 59/63 (93%)
Frame = +1
Query: 64 KMVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQ 243
KMV++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRYVYQ
Sbjct: 285 KMVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 344
Query: 244 PLD 252
P++
Sbjct: 345 PIE 347
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 97.9 bits (233), Expect = 9e-21
Identities = 42/61 (68%), Positives = 57/61 (93%)
Frame = +1
Query: 70 VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPL 249
V++AA++ +KSGKALVSRQ+V+MT+ RIEGLLAAFPKL+ G+QHT++ETE+VRYVYQP+
Sbjct: 120 VVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQPI 179
Query: 250 D 252
+
Sbjct: 180 E 180
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/69 (44%), Positives = 42/69 (60%)
Frame = +3
Query: 312 LRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEK 491
L L + VPEYC L + V AF L+FAFDE ++LG +E V + QV+ + EMDS EE
Sbjct: 235 LNLNNVKVPEYCPSLDDDGVCKTAFELIFAFDEAISLGNKEKVTVQQVKEYCEMDSVEEM 294
Query: 492 IYQAVRGPK 518
Y+ + K
Sbjct: 295 EYKQMMQEK 303
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 97.9 bits (233), Expect = 9e-21
Identities = 43/62 (69%), Positives = 58/62 (93%)
Frame = +1
Query: 67 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 246
+V++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRYVYQP
Sbjct: 85 LVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 144
Query: 247 LD 252
++
Sbjct: 145 IE 146
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +3
Query: 333 VPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRG 512
VPEY L E V AF L+FAFDE + LG +E+V + QV+ + EM+SHEEK ++ +
Sbjct: 201 VPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQ 260
Query: 513 PK 518
K
Sbjct: 261 SK 262
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/62 (67%), Positives = 58/62 (93%)
Frame = +1
Query: 67 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 246
+V++AA++ +KSGKALVSRQFV+M++ RI+GLLAAFPKL+ G+QHT+VETE+VRYVYQP
Sbjct: 58 LVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 117
Query: 247 LD 252
++
Sbjct: 118 IE 119
Score = 55.2 bits (127), Expect = 6e-08
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +3
Query: 369 VLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRGPK 518
V AF LLFAF E ++LG +E+V +AQV+ + EM+SHEEK+++ V K
Sbjct: 133 VCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSK 182
>02_05_0615 - 30364956-30365729,30365813-30366286
Length = 415
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG 195
++L+A TVC S L +RQ+++ T AR A++ GG
Sbjct: 22 LLLVAFTVCNYSSLKLSTRQYIDGTSARSSSTRASYASGGGGG 64
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 467
LE L+ +RV +Y L E + L + F L++ DE++ GY ++ + ++S++
Sbjct: 82 LELLQRIARVTKDYLGVLNE-DSLRKNFILVYELLDEVIDFGYPQTTSTEVLKSYI 136
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 690 GNLLGNRFR-WRRRDIVELPKPLPKXICERGGWPRLAASNLS 568
G+LLGN W++ D ++PK + + C++ GW S +S
Sbjct: 361 GHLLGNIDDIWKKGDSGKMPKAVLQKFCQKLGWEAPKYSKIS 402
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 614 SVSAAAGHVWPPPISHAATPLAVRACGSLPRVLGSSY 504
S S+A H PPP+ T + R+ SLP+ SSY
Sbjct: 41 SASSATDHRSPPPLGDINTIVCYRSSPSLPQRPRSSY 77
>08_02_0986 +
23328056-23328145,23328289-23329227,23329313-23329570,
23330384-23330692
Length = 531
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 608 SAAAGHVWPPPISHAATPLAVRACGSLPRVLGSSYG 501
S A HVW PP SH+ +P G L + S YG
Sbjct: 56 STGATHVWLPPPSHSVSPQGYMP-GRLYDLDASKYG 90
>03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811
Length = 79
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 271 SRQRLVTSWKIWRH*DSSAEWYQNIVYSSQKLKS*TRPSICYLLSTRLSLLG 426
S L TSW +W + S W + VY ++KS TR L ++LLG
Sbjct: 26 SSSSLPTSWGVWANLGSINTW-EKCVYGDSEIKS-TRNGKVQLGIEHMNLLG 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,688,749
Number of Sequences: 37544
Number of extensions: 518950
Number of successful extensions: 1680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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