Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40099
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 108 4e-24
At5g13760.1 68418.m01604 expressed protein similar to unknown pr... 30 2.2
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 5.1
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 28 6.7
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 28 6.7
At1g66330.2 68414.m07533 senescence-associated family protein si... 28 6.7
At1g66330.1 68414.m07532 senescence-associated family protein si... 28 6.7
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 28 6.7
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 108 bits (260), Expect = 4e-24
Identities = 52/105 (49%), Positives = 74/105 (70%)
Frame = +3
Query: 204 YICRNRVRQICLPATRQLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQA 383
YI VR + P L++LL+TTK SNILEDL TL L S++VPEY + L E + +
Sbjct: 48 YIETENVRYVYQPI-EALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRAS 106
Query: 384 FNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRGPK 518
F L+FAFDE+++LG++ESV +AQV+ + EM+SHEEK+++ V K
Sbjct: 107 FELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSK 151
Score = 91.9 bits (218), Expect = 5e-19
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +1
Query: 67 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 246
MV++AA + KSGK +VSR +V+M++ RIEGLLAAFPKL+ G+QHT++ETE+VRYVYQP
Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQP 60
Query: 247 LD 252
++
Sbjct: 61 IE 62
>At5g13760.1 68418.m01604 expressed protein similar to unknown
protein (gb AAF63775.1)
Length = 569
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 306 ETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGY 428
+T +F+ + L T+ N+ F LLF F ++VA+G+
Sbjct: 118 QTRSIFTPTPQQTLASLNSTKYTNKFFLLLFIFHKVVAIGF 158
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 374 QDFSFCELYTIFWYHSAEESQCLQIF 297
+DF++ E Y FW + ++ CL+ F
Sbjct: 313 KDFTYAEYYKKFWSRNLDQEHCLENF 338
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 467
LE L+ +RV+ +Y L E + + F L++ DE++ GY ++ + ++S++
Sbjct: 83 LELLQRIARVIKDYLGVLNE-DSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYI 137
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 467
LE L+ +RV+ +Y L E + + F L++ DE++ GY ++ + ++S++
Sbjct: 83 LELLQRIARVIKDYLGVLNE-DSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYI 137
>At1g66330.2 68414.m07533 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 367 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 275
+++VS + L+KS+N SRS R+LLA+V
Sbjct: 2 ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32
>At1g66330.1 68414.m07532 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 367 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 275
+++VS + L+KS+N SRS R+LLA+V
Sbjct: 2 ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 28.3 bits (60), Expect = 6.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 663 WRRRDIVELPKPLPKXICERGGW 595
W++ + ++PK L +C+R GW
Sbjct: 387 WKKGEAQKIPKALLHQLCQRSGW 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,928
Number of Sequences: 28952
Number of extensions: 383553
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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