Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40098
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    30   2.7  
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    28   8.3  

>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 647 FIYKF*CLFQILRSSFLTK*YVLCISHLFLFSSHINLLVFFWFWHVCVLASVK 489
           F+Y+  CLF+  +  F     +  I +  L+ +HI L+  F  W   +L S +
Sbjct: 547 FMYELGCLFRYCQHPFYHCVDISVILYSELYLAHIKLICLFHLWQNLILFSYR 599


>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
            24273725-24273826,24273912-24274088,24274193-24274398,
            24274491-24274575,24274641-24274798,24274873-24274948,
            24275117-24275245,24275313-24275457,24275561-24275691,
            24276183-24276335,24276447-24276636,24277006-24277139,
            24277248-24277406,24277659-24277964,24278040-24278216,
            24278446-24278529,24278592-24278822,24278913-24279002,
            24279090-24279211,24279293-24279448,24279477-24279635,
            24279705-24279765,24280004-24280138,24280384-24280471,
            24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 451  VNN*NGEL*KYYYLTLANTQT--CQNQKKTNKLMCELNRKRCEIHNTYYLVRK 603
            + N  G++ K   L +AN Q+  C N+++ +K   ++NR +  I     LV+K
Sbjct: 892  IENAGGQVLKDQKLKVANIQSILCVNRQQLDKTSSDINRHKVRITTCEKLVKK 944


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,450,226
Number of Sequences: 37544
Number of extensions: 344720
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)