Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40098
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)                 30   2.1  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             30   2.1  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_23527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 753 PSNFRK*PNINIQNALSKNLAKI 685
           PS+F K PN+NI N +S ++AK+
Sbjct: 6   PSSFSKIPNLNIANLVSSDVAKV 28


>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
          Length = 748

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 265 INQLHYISLHIIMCRVNYYINQITFSTSIIYT 360
           +NQ+ Y++ H++     Y++NQ+T+   I+ T
Sbjct: 394 VNQVTYVA-HLVQANEWYFVNQVTYDAPIVQT 424



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 265 INQLHYISLHIIMCRVNYYINQITFSTSII 354
           +NQ+ Y++ H++     Y++NQ+T+   I+
Sbjct: 466 VNQVTYVA-HLVQVNECYFVNQVTYGAPIV 494



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 INQLHYISLHIIMCRVNYYINQITFSTSII 354
           +NQ+ Y   H++     YY+NQ+T+   I+
Sbjct: 304 VNQVTY-GAHLVQANEWYYVNQVTYGAPIV 332



 Score = 25.8 bits (54), Expect(2) = 9.1
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +1

Query: 265 INQLHYISLHIIMCRVNYYINQITF 339
           +NQ+ +++ H++     YY+NQ+T+
Sbjct: 610 VNQVTHVA-HLVQVNECYYVNQVTY 633



 Score = 20.6 bits (41), Expect(2) = 9.1
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 316 YYINQITFSTSII 354
           Y++NQ+T+   I+
Sbjct: 644 YFVNQVTYDVPIV 656


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 640 INFSAYFKYLGHLFSLS-NMYYVSHISFYLVH 548
           I+FS  F YL HL+ +S    + SH+  YL+H
Sbjct: 225 IHFSPLFTYLIHLYPISYRTIHFSHLVTYLIH 256



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 640 INFSAYFKYLGHLFSLSNMYYVSHISFYLVHTL 542
           I+FS  F YL HL+ +S  Y   H+S  L+H +
Sbjct: 405 IHFSPLFTYLIHLYPIS--YRTIHVSPLLIHVV 435


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 WENETKPLDVTSRDPPKSPLRQS 174
           W++ET P DV    PP  P+R S
Sbjct: 499 WQDETSPSDVAESPPPIPPIRCS 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,747,469
Number of Sequences: 59808
Number of extensions: 423466
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)