Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40098
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   3.2  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   3.2  
Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL021175-5|CAA15967.1|  357|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 640  INFSAYFKYLGHLFSLSNM-YYVSHISFY 557
            IN   ++ YL   F++ NM YYVS  SFY
Sbjct: 1029 INPEGFYNYLTGWFNVDNMMYYVSQASFY 1057


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 640  INFSAYFKYLGHLFSLSNM-YYVSHISFY 557
            IN   ++ YL   F++ NM YYVS  SFY
Sbjct: 1026 INPEGFYNYLTGWFNVDNMMYYVSQASFY 1054


>Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical
           protein W04D2.3 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 629 CLFQILRSSFLTK*YVLCISHLFLFSSHINLLVFFWFWHVCVLAS 495
           C F++ + + + +  V C+  + +F+  I   V  WFW+V +L S
Sbjct: 258 CDFEVRQVANIQRYSVQCVLVINIFNEKI--FVLLWFWYVILLLS 300


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
           protein C26H9A.2 protein.
          Length = 1334

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 664 FYLLISCYFCQIFR*RILDVYIRLLPEIGWNCXG 765
           F +   CY C++     LD Y ++  +I WN  G
Sbjct: 785 FNIYFGCYVCRLIFNMALDNYEKMTSDIRWNDDG 818


>AL021175-5|CAA15967.1|  357|Caenorhabditis elegans Hypothetical
           protein Y6E2A.6 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 649 CLFINFSAYFKYLGHLF-SLSNMYYVSHISFYLVHTLI 539
           C+++N SA F YL  +F + SN++  +H     V T++
Sbjct: 259 CIYLNGSAAFHYLDMIFINFSNLFISTHGLLSCVTTIL 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,184
Number of Sequences: 27780
Number of extensions: 353430
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)