Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40098
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53760.1 68418.m06680 seven transmembrane MLO family protein ...    29   3.0  
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    29   3.0  
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ...    28   6.9  
At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2...    28   6.9  

>At5g53760.1 68418.m06680 seven transmembrane MLO family protein /
           MLO-like protein 11 (MLO11) identical to membrane
           protein Mlo11 [Arabidopsis thaliana]
           gi|14091592|gb|AAK53804; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 573

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 584 VLCISHLFLFSSHINLLVFFWFW 516
           +L + H  LF +   L  FFWFW
Sbjct: 369 LLSLIHFILFQNSFELASFFWFW 391


>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 187 WLFTKTVSVDFLGDPE-KLRPAALFHFPTFVHFHR 86
           WLF   V+ DF G P+ ++  +  F F T V  HR
Sbjct: 585 WLFEHRVNTDFRGPPQYQIGTSLWFSFSTMVFAHR 619


>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
           MLO-like protein 5 (MLO5) identical to MLO-like protein
           5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 501

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 584 VLCISHLFLFSSHINLLVFFWFWH 513
           VL I H  LF +   +  FFW W+
Sbjct: 357 VLHIIHFILFQNAFEITYFFWIWY 380


>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
           (GLUR9) plant glutamate receptor family, PMID:11379626
          Length = 947

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 187 WLFTKTVSVDFLGDP-EKLRPAALFHFPTFVHFHR 86
           WLF   V+ DF G P  ++  +  F F T V  HR
Sbjct: 596 WLFEHRVNTDFRGPPHHQIGTSFWFSFSTMVFAHR 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,371,173
Number of Sequences: 28952
Number of extensions: 306706
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)