Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40097
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 182 IWY*VVIGLKPYTELVKSVIQTPLATHSALV-LLCLFVY-MN*QL*DMRSWSRW 27
           IW   +I    Y  +VK +   PL+ + AL+ ++ ++++ +   +  M  W+R+
Sbjct: 140 IWTMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWNRY 193


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 182 IWY*VVIGLKPYTELVKSVIQTPLATHSALV-LLCLFVY-MN*QL*DMRSWSRW 27
           IW   +I    Y  +VK +   PL+ + AL+ ++ ++++ +   +  M  W+R+
Sbjct: 16  IWTMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWNRY 69


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 182 IWY*VVIGLKPYTELVKSVIQTPLATHSALV 90
           IW   +I    Y  +VK +   PL+ + AL+
Sbjct: 106 IWTMTMIAFDRYNVIVKGLSGKPLSINGALI 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,426
Number of Sequences: 438
Number of extensions: 5045
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)