Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40097
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08630.1 68417.m01420 expressed protein ; expression supporte...    30   1.7  
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    29   5.1  

>At4g08630.1 68417.m01420 expressed protein ; expression supported
           by MPSS
          Length = 845

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 196 VSF*YEDTKTHRLVKRFIDATIEYWFFKSTRDA*LAGVLSVKRLLLQI 339
           +S+ +   K H +    +D  ++YW  + TR A     + V+R L+++
Sbjct: 768 LSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMEL 815


>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 405  KAKAPETILKTLMYFFKDVSCTYL**ESFYRQNSCELCVPGTLKKPILYCGIDEPLYESM 226
            K++ PETI   + Y   D +   L  E+ YR   C L  P  L   ++  G+D+P   S+
Sbjct: 1191 KSRRPETIFDAVYY---DNTRVLLPDENIYRIE-CRLSTPAKLSIQLMCNGLDKPDVTSV 1246

Query: 225  S 223
            S
Sbjct: 1247 S 1247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,902
Number of Sequences: 28952
Number of extensions: 378434
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)