Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40096
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...   118   1e-27
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.35 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   4.3  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   5.6  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   7.4  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   7.4  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score =  118 bits (284), Expect = 1e-27
 Identities = 60/139 (43%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
 Frame = +2

Query: 257 KPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSI 424
           KPS   +++    +R  CLGDKP  +ELLSD       T    +NY DPN+N++ P+ SI
Sbjct: 71  KPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSI 130

Query: 425 HGNHDDPVGQGSVSSLDILSITGLVNYFVNGPTTRT*EYHQYFCKKVLRGSPSMGLSHLK 604
           HGNHDDP G G  S+LDIL +TGLVNYF   P            +K        G+S+++
Sbjct: 131 HGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVR 190

Query: 605 DQRLSRLFAEKKVEMERPD 661
           D+RL   F E KV+  RPD
Sbjct: 191 DERLYHSFRENKVKFLRPD 209



 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 32/53 (60%), Positives = 45/53 (84%)
 Frame = +3

Query: 90  DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 248
           ++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD+F
Sbjct: 15  ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIF 67



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 25/77 (32%), Positives = 39/77 (50%)
 Frame = +1

Query: 529 HVRISPVLLQKGLTRLALYGT*PFKRSETFTSFC*KKSGNGETR*NIGTGFHLFVLHPNH 708
           ++ +SP+LLQKG T+LALYG    +    + SF   K             F+L  +H NH
Sbjct: 166 NIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNH 225

Query: 709 ADRGHSNYIPEGVLPTF 759
           +    ++Y+PE  +  F
Sbjct: 226 SAHTPTSYLPESFIQDF 242


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 248 KQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 123
           + +T+  + + I L R+ +     YK +FS YR+ F   ++N
Sbjct: 28  RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 250 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEM 71
           ++RSPP S K  S C +    SS+ +       GS+      + E   +L  SS  H+  
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSD 222

Query: 70  S 68
           S
Sbjct: 223 S 223


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 78  AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 236
           +WSP   L I +A +I+L   E  P R  +  I   +V S+A   + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 777 PEHDSPICPMEGELN 821
           P HD+P+CP + +LN
Sbjct: 391 PSHDTPLCPEDIKLN 405


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 356 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 472
           K ++  +N  D ++ I  P+L    N DD +G+  + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/70 (18%), Positives = 32/70 (45%)
 Frame = +2

Query: 554 CKKVLRGSPSMGLSHLKDQRLSRLFAEKKVEMERPDETLGLGSIYLYYIQIMLTEDTVTI 733
           C K  R   +  ++ LKD  +  L  ++K++  +    LG  ++   ++ +   E  +  
Sbjct: 129 CSKKSRNEATQAITTLKDLFIGGLLPDRKLKYMKQQSCLGSKNVTDKHLMVWAFESFLKS 188

Query: 734 FQKECYQLLD 763
           F  +  Q+++
Sbjct: 189 FYFKYIQIIE 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,995
Number of Sequences: 5004
Number of extensions: 77130
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)