Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40096
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 113 1e-25
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 97 2e-20
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 29 3.4
03_06_0588 - 34924061-34924644,34924662-34925058 29 3.4
04_03_0280 + 13854758-13855585 29 5.9
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 29 5.9
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 5.9
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 5.9
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 7.8
07_01_0877 - 7276300-7276967,7277050-7277173 28 7.8
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 113 bits (273), Expect = 1e-25
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = +2
Query: 257 KPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT---VNYEDPNLNISYPILSIH 427
KPS + + K EI+R+YCL D+PV +++SDQ NF VNYEDPN N+ P+ +IH
Sbjct: 82 KPSRSTLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIH 141
Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYF----VNGPTTRT*EYHQYFCKKVLRGSPSMGLS 595
GNHDDP G ++S++DILS LVNYF + G + KK GL
Sbjct: 142 GNHDDPAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLG 201
Query: 596 HLKDQRLSRLF-AEKKVEMERPDETLGL 676
+++D+RL+R+F V+ RP+ G+
Sbjct: 202 NIRDERLNRMFQTPHAVQWMRPETQDGM 229
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +3
Query: 93 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQ 254
+TLR+L+A+D HLG+ME D +R DSF AFEE+ SLA Q VD +LLGGDLF +
Sbjct: 27 NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHE 80
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 96.7 bits (230), Expect = 2e-20
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Frame = +2
Query: 257 KPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYPILSIH 427
KPS++ + K EIIR YCL D V +++SDQ ++N VN+EDPN NI P+ ++H
Sbjct: 69 KPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVFTVH 128
Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYF--VNGPTTRT*EYH--QYFCKKVLRGSPSMGLS 595
G HD P G +S+ DILS VNYF V+ ++ + F KK GL
Sbjct: 129 GTHDGPAGVDGLSATDILSACNFVNYFGKVDPGSSDVDQISVCPVFIKKGATSVALYGLG 188
Query: 596 HLKDQRLSRLF-AEKKVEMERPDETLGLGSIYLYY 697
+++D++LSR+ K++ + D ++++++
Sbjct: 189 NIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFH 223
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 248
++W ++ LRIL+A+D HLG++E D +R DSF FEE+ SLAV VD ILLGG+LF
Sbjct: 6 ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65
Query: 249 DQ 254
+
Sbjct: 66 HE 67
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 78 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQL 257
++S + + +A+ +HLG +E P + DS +E +Q DL+++ G L
Sbjct: 310 SFSHQEAIFRTVAAILHLGNIEFSPGKEFDSSAIKDEKSKFHLQMAADLLMVDGSL---- 365
Query: 258 NLLSIVCL-NVQK*SANIVLGIN 323
LLS +C ++ NIV ++
Sbjct: 366 -LLSTLCYRTIKTPEGNIVKAVD 387
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 63 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 218
END AW PD + A + L F + V S IA +V L +CDV
Sbjct: 52 ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104
>04_03_0280 + 13854758-13855585
Length = 275
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 575 SPSMGLSHLKDQRLSRLFAEKKVEMERPDETLGLGS 682
+P+ GL + + L R+ A + VEM P TLGLG+
Sbjct: 26 APANGL--VTQEELKRVAAHRAVEMVEPGMTLGLGT 59
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 431 NHDDPVGQGSVSSLDILSITGLVNYFVNGPTTRT*EYHQYFCKKVLRGSPSMGLSHLKDQ 610
+HDD +G+ ++ + + ++ + TT T QYFC G PS+G ++ ++
Sbjct: 360 HHDDQIGRYKITGITPIPMSNNICPVGEEGTTMT--VLQYFCDMEKTGVPSVGHWNIAEE 417
Query: 611 RL 616
++
Sbjct: 418 KI 419
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 293 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 439
+ R+ G K ++ + D NFS + ++DP L + ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 621 VFLLKKKWKWRDPMKHWDWVPFICTTSKSC*QRTQ*LYSRRSATNF*TV-VWGPEHDSPI 797
+F++++ + + H D PF+C S S +R Y R S+ + T V G + D I
Sbjct: 621 IFVVEEAKMFETQLVHLDVKPFLCIRSISLLERLS--YCRSSSRSVQTTNVPGEDIDERI 678
Query: 798 CP 803
CP
Sbjct: 679 CP 680
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 609 RDFHVFLLKKKWKWRDPMK 665
R H +LL+ KWKW+ P K
Sbjct: 997 RSHHQWLLQFKWKWQKPWK 1015
>07_01_0877 - 7276300-7276967,7277050-7277173
Length = 263
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 264 EGLVDQTDHLLKVSNQHHIVPQETKLLQKL 175
+G++D+T++L K HH + +E K ++KL
Sbjct: 75 KGMIDRTNNLFKKVVAHHQIAREIKDIKKL 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,681,673
Number of Sequences: 37544
Number of extensions: 450202
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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