Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40096
         (823 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132144-1|AAD33591.1|  620|Drosophila melanogaster endo/exonucl...   132   4e-31
AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-P...   132   4e-31
BT022784-1|AAY55200.1|  113|Drosophila melanogaster IP07363p pro...    32   0.82 
AE013599-3911|AAF47235.2|  324|Drosophila melanogaster CG13587-P...    31   1.4  
AE014134-2032|AAF53071.3|  461|Drosophila melanogaster CG14916-P...    30   3.3  
AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA ...    29   7.7  

>AF132144-1|AAD33591.1|  620|Drosophila melanogaster
           endo/exonuclease Mre11 protein.
          Length = 620

 Score =  132 bits (320), Expect = 4e-31
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 4/138 (2%)
 Frame = +2

Query: 260 PSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIH 427
           PS N + KC E++R+Y  GD+PVS+E+LSDQ + F    +++VNYEDPNLNI+ P+ SIH
Sbjct: 69  PSQNALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIH 128

Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYFVNGPTTRT*EYHQYFCKKVLRGSPSMGLSHLKD 607
           GNHDDP G G +SSLD+LS +GLVNYF         E      +K        GLSH+ D
Sbjct: 129 GNHDDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHD 188

Query: 608 QRLSRLFAEKKVEMERPD 661
            RL+RL  + KV+   P+
Sbjct: 189 GRLARLIKDFKVKFNCPE 206



 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = +3

Query: 90  DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 248
           D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DVD+ILLGGDLF
Sbjct: 12  DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLF 64



 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
 Frame = +1

Query: 505 FCKWTDYTHVRISPVLLQKGLTRLALYGT*PF---KRSETFTSF-----C*KKSGNGETR 660
           F +WTD T V ISPVL++KG ++LALYG       + +     F     C +   NGE  
Sbjct: 155 FGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRLARLIKDFKVKFNCPENVANGEDG 214

Query: 661 *NIGTG---FHLFVLHPNHADRGHSNYIPEGVLPTF 759
                    FHL V+H N ADRG  NY+PE +LP+F
Sbjct: 215 NESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSF 250


>AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-PA
           protein.
          Length = 620

 Score =  132 bits (320), Expect = 4e-31
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 4/138 (2%)
 Frame = +2

Query: 260 PSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIH 427
           PS N + KC E++R+Y  GD+PVS+E+LSDQ + F    +++VNYEDPNLNI+ P+ SIH
Sbjct: 69  PSQNALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIH 128

Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYFVNGPTTRT*EYHQYFCKKVLRGSPSMGLSHLKD 607
           GNHDDP G G +SSLD+LS +GLVNYF         E      +K        GLSH+ D
Sbjct: 129 GNHDDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHD 188

Query: 608 QRLSRLFAEKKVEMERPD 661
            RL+RL  + KV+   P+
Sbjct: 189 GRLARLIKDFKVKFNCPE 206



 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = +3

Query: 90  DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 248
           D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DVD+ILLGGDLF
Sbjct: 12  DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLF 64



 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
 Frame = +1

Query: 505 FCKWTDYTHVRISPVLLQKGLTRLALYGT*PF---KRSETFTSF-----C*KKSGNGETR 660
           F +WTD T V ISPVL++KG ++LALYG       + +     F     C +   NGE  
Sbjct: 155 FGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRLARLIKDFKVKFNCPENVANGEDG 214

Query: 661 *NIGTG---FHLFVLHPNHADRGHSNYIPEGVLPTF 759
                    FHL V+H N ADRG  NY+PE +LP+F
Sbjct: 215 NESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSF 250


>BT022784-1|AAY55200.1|  113|Drosophila melanogaster IP07363p
           protein.
          Length = 113

 Score = 32.3 bits (70), Expect = 0.82
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 300 RIISVHLNIQLTEGLVDQTDHLLKVSNQHHIVPQETKLLQKL*SYLLRVPDH 145
           R I +H  +    G    T H     +  H V Q ++++Q L S+ ++V  H
Sbjct: 54  RAIDLHPGVDQLHGCTHHTSHTTSQCSHQHFVQQTSRIIQVLLSHFVQVKPH 105


>AE013599-3911|AAF47235.2|  324|Drosophila melanogaster CG13587-PA
           protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 590 LSHLKDQRLSRLFAEKKVEMERPDETLGLGSIYLYYIQIMLTEDT 724
           L+H+  +  + L A+  VE  R  ++L  G++YL Y+ +     T
Sbjct: 186 LAHIASEHRTSLLAQWLVEFNRKSQSLAEGNVYLAYVGLAYNSST 230


>AE014134-2032|AAF53071.3|  461|Drosophila melanogaster CG14916-PA
           protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 431 NHDDPVGQGSVSSLDILSITGL------VNYFVNGPTTRT*EYHQYFCKKVL 568
           NHD PV +   + L +L  +GL      V+ +  GP T+T E++ +F + V+
Sbjct: 48  NHDHPVFEDIRTILSVLKASGLMPIYEQVSDYEVGPPTKTNEFYSFFVRGVV 99


>AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA
           protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 232 KSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEMSFSII 56
           K+ KS    TAR   S K+ + SSPR+ S   +   +   +   S  + D+ E +F+++
Sbjct: 387 KAPKSRKETTARSNLSRKSYRRSSPRSRSRGSRANALESPLQ-KSEDTPDNVEYAFALV 444


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,099,275
Number of Sequences: 53049
Number of extensions: 799636
Number of successful extensions: 1846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)