Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40096
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical pr... 91 1e-18
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 29 5.3
AL132952-1|CAB61134.2| 214|Caenorhabditis elegans Hypothetical ... 28 7.0
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 28 9.3
AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical... 28 9.3
>Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical
protein ZC302.1 protein.
Length = 728
Score = 90.6 bits (215), Expect = 1e-18
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 PSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRTV----NYEDPNLNISYPILSIH 427
PS + T+++R+YCL P+++E LSD NF+++V NY D NLN+ PI +IH
Sbjct: 120 PSREVQHRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIH 179
Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYFVNGPTTRT*EYHQYFCKKVLRGSPSMGLSHLKD 607
GNHDD G+G +++LD+L +GLVN F + +K G+ +D
Sbjct: 180 GNHDDLSGKG-LTALDLLHESGLVNLFGKHSNIQEFIVSPILLRKGETRLALYGIGSQRD 238
Query: 608 QRLSRLFAEKKVEMERPD 661
RL R F + RP+
Sbjct: 239 DRLVRAFKNNSISFLRPN 256
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 90 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQLN 260
+D ++IL+A+DIH G+ EN D+ FEEVL +A + VD+ILLGGDLF + N
Sbjct: 63 EDIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGDLFHENN 119
Score = 49.6 bits (113), Expect = 3e-06
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Frame = +1
Query: 502 LFCKWTDYTHVRISPVLLQKGLTRLALYGT*PFKRSETFTSFC*KKSGNGETR*NIGTG- 678
LF K ++ +SP+LL+KG TRLALYG + +F K + R N G
Sbjct: 204 LFGKHSNIQEFIVSPILLRKGETRLALYGIGSQRDDRLVRAF--KNNSISFLRPNAGAED 261
Query: 679 -FHLFVLHPNHADRG-H---SNYIPEGVLPTF 759
F+LFVLH N R H N++PE ++P F
Sbjct: 262 WFNLFVLHQNRPRRAMHRSTGNFLPESLIPQF 293
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 332 IELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFV 511
+ L+ ++ RT NY +LN+SY + +P GQ S + +I+ I ++
Sbjct: 515 VRQLASTVREHPRTTNYPSRSLNLSYEVSGALA-RTNPNGQLSAADNNIVLINDSISLDH 573
Query: 512 NGPTT 526
N P T
Sbjct: 574 NLPDT 578
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 332 IELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFV 511
+ L+ ++ RT NY +LN+SY + +P GQ S + +I+ I ++
Sbjct: 515 VRQLASTVREHPRTTNYPSRSLNLSYEVSGALA-RTNPNGQLSAADNNIVLINDSISLDH 573
Query: 512 NGPTT 526
N P T
Sbjct: 574 NLPDT 578
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 SVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDD 442
SV +F + C + ELL ++F + NLN+ + S+ G+H+
Sbjct: 137 SVYMLFAYFSVWHATCYFPGKANSELLEYVSEDFQENFGMDSRNLNVIGTLFSV-GSHET 195
Query: 443 PVGQGSVSSL-DILSITGLVNYFV 511
+ + S+ +SI ++ +FV
Sbjct: 196 TLRAWTAMSIWSTISIASIITFFV 219
>AL132952-1|CAB61134.2| 214|Caenorhabditis elegans Hypothetical
protein Y51H4A.1 protein.
Length = 214
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 250 SNRSPPKSIKSTSHCTARDKTSSKAIKLS--SPRTGSFSM 137
+ ++P S KSTS C + + S ++I+ S SPR SF +
Sbjct: 99 TEKTPAGSPKSTSSCISSEILSEQSIEFSSISPRPSSFPL 138
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 293 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 472
+ ++YC P ++ ++ Q +F T +DP +SY +I +D S +S
Sbjct: 217 VFQRYC---PPGTVFNINQQSCDFQCTT--DDPTTTVSYSTSTITTPQEDDSEYSSTTSA 271
Query: 473 DILSIT 490
D++S T
Sbjct: 272 DVISTT 277
>AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical
protein Y59A8B.22 protein.
Length = 552
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 557 KKVLRGSPSMGLSHLKDQRLSRLFAEKKVEMERP-DETLGLGSIYLYY 697
+++ RG P+ L+ Q +F KKVE DE L LG Y+
Sbjct: 398 ERIARGEPNKSLARTFAQGADAMFKLKKVESRSSNDEELKLGDTLHYF 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,189
Number of Sequences: 27780
Number of extensions: 417883
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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