Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40096
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...   113   2e-25
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    32   0.40 
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    29   3.7  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    29   3.7  
At2g35140.1 68415.m04310 expressed protein ; expression supporte...    29   3.7  
At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarit...    29   4.9  

>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score =  113 bits (271), Expect = 2e-25
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
 Frame = +2

Query: 257 KPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT---VNYEDPNLNISYPILSIH 427
           KPS   + K  EI+R++CL DKPV  +++SDQ  NF      VNYEDP+ N+  P+ SIH
Sbjct: 63  KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122

Query: 428 GNHDDPVGQGSVSSLDILSITGLVNYF----VNGPTTRT*EYHQYFCKKVLRGSPSMGLS 595
           GNHDDP G  ++S++DILS   LVNYF    + G        +    KK        GL 
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG 182

Query: 596 HLKDQRLSRLF-AEKKVEMERPD 661
           +++D+RL+R+F     V+  RP+
Sbjct: 183 NIRDERLNRMFQTPHAVQWMRPE 205



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = +3

Query: 93  DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQ 254
           DTLR+L+A+D HLG+ME D +R  DSF AFEE+ S+A +  VD +LLGGDLF +
Sbjct: 8   DTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHE 61


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
            PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 609  RDFHVFLLKKKWKWRDPMKHWDWV 680
            R  H +LL+ KWKW+ P K  +W+
Sbjct: 995  RSHHQWLLQFKWKWQKPWKLSEWI 1018


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 609  RDFHVFLLKKKWKWRDPMKHWDWV 680
            R  H ++++ KWKW+ P +  +W+
Sbjct: 990  RSHHQWIVQFKWKWQKPWRLSEWI 1013


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 609  RDFHVFLLKKKWKWRDPMKHWDWV 680
            R  H ++++ KWKW+ P +  +W+
Sbjct: 990  RSHHQWIVQFKWKWQKPWRLSEWI 1013


>At2g35140.1 68415.m04310 expressed protein ; expression supported
           by MPSS
          Length = 879

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 581 SMGLSHLKDQRLSRLFAEKKVEMERPDET 667
           + GLS  + QRL +LF+ KKVE  R  ET
Sbjct: 132 NFGLSKAQVQRLLKLFSMKKVERSRLRET 160


>At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarity
           to SP|Q13454 N33 protein {Homo sapiens}; contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 346

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 357 FIWSDSNSILTGLSPRQYLRIISVHL-NIQLTEGLVDQTDHLLKVSNQHHIVPQETKL 187
           F  S S+  L G++   ++R++S  + N++   G +DQ+D+     +    V Q TKL
Sbjct: 122 FSKSQSSFQLFGVNALPHIRLVSPSISNLRDESGQMDQSDYSRLAESMAEFVEQRTKL 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,211
Number of Sequences: 28952
Number of extensions: 384335
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)