Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40094
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    58   1e-09
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    36   0.005
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   3.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   7.2  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   7.2  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   7.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.5  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   9.5  

>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 30/67 (44%), Positives = 40/67 (59%)
 Frame = +3

Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
           F D NL  DKFL    + +DGWVP++ +  F R+ +  +  + I NAL KS   LLEV E
Sbjct: 75  FSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDE 132

Query: 435 DNKKVRR 455
             +KVRR
Sbjct: 133 AGEKVRR 139



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 506 MNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSRLENQ 685
           M RS+Y KGF  D   D  +   K F+E    I    + +   K+ F+G   +  +  + 
Sbjct: 152 MERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVRMRRDDDKK-FKGSVFVEFKEPDV 209

Query: 686 AEKFLD 703
           A KFL+
Sbjct: 210 ANKFLE 215


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
           F   NL +D FL++ +  D+G+VPL  L  FNR+   + D +++  A     S +++V+ 
Sbjct: 337 FSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDIIDVAI 393

Query: 435 D 437
           D
Sbjct: 394 D 394


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 324 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKE 503
           P+ I TK  R A + +    +A  LN+ TSG+      N++  R     LP   + +  +
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQ-NRTVRVDLPLDKKTILVD 675

Query: 504 I*TDQFMRKDL 536
              D  +RKD+
Sbjct: 676 QICDMHIRKDM 686


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 136 MTEDKEVTVETNGQEENAKTENSEDE 213
           + ED  V +    +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 313 SSNFICSCRNLSRC 272
           S NF+CSCR  S C
Sbjct: 7   SRNFLCSCRGFSVC 20


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 545 ASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSRLENQAEKFL 700
           AS D L+NYF+QF   EN   R  +  +T   L Q L  + +  +N + + L
Sbjct: 336 ASNDPLMNYFEQF--TENAKKRTDLYAATIGELEQHLEQVETTPQNNSPEAL 385


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 767 GLRKSPAQSVNSSLSPNWAL 708
           GLRK+  Q  N++L PN AL
Sbjct: 705 GLRKNSTQEKNANLDPNEAL 724


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 800  LSLTGKILLVSGLRKSPAQSVNSSLSPNWALWHPKTFL 687
            L+LTGKIL + GLR+   ++V + LS    +  PK+ L
Sbjct: 974  LTLTGKILRIGGLRE---KTVAAKLSGMKEILFPKSNL 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,461
Number of Sequences: 5004
Number of extensions: 68307
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)