Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40094
(802 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 46 5e-05
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 43 3e-04
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 39 0.004
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30) 33 0.27
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.27
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 30 1.9
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 3.3
SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92) 29 4.4
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36) 29 5.8
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/51 (37%), Positives = 34/51 (66%)
Frame = +3
Query: 351 RLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKE 503
++ +++D + +A + KS+S L+EVSED KVRR +P+ E+ E R++
Sbjct: 26 QIESMSDDVNFLAKTMKKSSSDLIEVSEDLTKVRRTKSKPVEELTTEARQK 76
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/66 (28%), Positives = 39/66 (59%)
Frame = +2
Query: 512 RSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSRLENQAE 691
+++Y KGF K+A+LD+L YF+ ++ ++MR K+ + + F+G + +A+
Sbjct: 80 KTVYVKGFPKEATLDELQEYFEGKGKIVFIMMR----KTLESKEFKGSVFIEFATLPEAK 135
Query: 692 KFLDAK 709
F++ K
Sbjct: 136 AFVEEK 141
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/44 (38%), Positives = 31/44 (70%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVI 386
F + NLH+D FL++Q+ D+G++P+ ++ F R+ LT D ++I
Sbjct: 133 FSEANLHKDFFLRKQMD-DEGYIPIALIASFYRVQALTHDMNLI 175
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 407
F D L +D+FL++QI+ DG+V + + FN++ ++T+D ++ A+ S
Sbjct: 37 FSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKAMKLS 88
>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
Length = 824
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 97 LKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDE 213
L+ + H R IK T + E+NG E NA E+SEDE
Sbjct: 565 LEKSPLMHDRPIKDTGMCNLAEESNGSESNATQEDSEDE 603
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 509 NRSIYAKGFAKDASLDDLLNYFKQFQEVENV-IMRRYV 619
+RS++ G A + L +YF+QF EVE+V IMR ++
Sbjct: 79 SRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFL 116
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 124 RKIKMTEDKEVTVETNGQEENAKTENSEDE 213
+K K+T+DK+V E EE K E+ D+
Sbjct: 739 KKKKLTQDKDVETENKNNEEKEKLEDDADQ 768
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 716 WALWHPKTFLPGSLVWNVANTDPGTSVSLWISQRIFS*LHSQLPETA 576
W + P + G +V D G SVS W+ Q+ F+ L LP ++
Sbjct: 175 WVMEDPARLVTG----HVGRADSGVSVSFWMRQQDFAELDGYLPSSS 217
>SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92)
Length = 243
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 100 KSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDET 216
K + F+ + +ED + ETN EE++ S+DE+
Sbjct: 186 KKKSTFYSESVLFSEDSSDSDETNSDEESSSASESKDES 224
>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
Length = 942
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 291 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 470
Q + DD V EI + NR+ + TD+ N N ST S+DNK V E
Sbjct: 353 QPSCENDDLTVNGEIAKRRNRIEAPLKSTDLRVNVENVSTK--KGESQDNKPVSMEKESD 410
Query: 471 LPEMNEELRKE 503
L + + +E
Sbjct: 411 LDSIKQSKDRE 421
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 127 KIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYLVM*IY 273
K ++ +E+ +E + ENA+ + E+E E ++A+ ++VE + +Y
Sbjct: 74 KAEIQPFREMRLEIKKRLENARDQEKEEEMEKELAMKKKVERRFIEQMY 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,087,603
Number of Sequences: 59808
Number of extensions: 462401
Number of successful extensions: 1960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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