Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40094
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 107 7e-24
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 46 2e-05
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 46 2e-05
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 29 2.9
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 29 3.9
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 29 3.9
AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical ... 29 5.1
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 28 6.8
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 28 6.8
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 28 6.8
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 28 8.9
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 107 bits (258), Expect = 7e-24
Identities = 47/84 (55%), Positives = 66/84 (78%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
FG++NL RDKFLQE++K DDGWVP+ + FNRLA +++DT+ IANA+ S SG++ VSE
Sbjct: 24 FGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNSGSGIISVSE 83
Query: 435 DNKKVRRNPEQPLPEMNEELRKEI 506
DN+K+RRN E P+PE + E ++I
Sbjct: 84 DNQKIRRNEENPVPENSLEYWQKI 107
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +2
Query: 509 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSRLENQA 688
+R++Y KGF+ D LDD++ + QF E ENV+MRR R F+G + + +A
Sbjct: 109 HRTVYMKGFSTDTQLDDIIQWANQFGETENVLMRRL---KPGDRTFKGSVFITYKTREEA 165
Query: 689 E 691
E
Sbjct: 166 E 166
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
F NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+ +E+ E
Sbjct: 150 FSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN--VELDE 206
Query: 435 DNKKVR 452
+KVR
Sbjct: 207 KFEKVR 212
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
F NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+ +E+ E
Sbjct: 52 FSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN--VELDE 108
Query: 435 DNKKVR 452
+KVR
Sbjct: 109 KFEKVR 114
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 327 LEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEI 506
LE+ + + +L K ED + L K LEVS K + PE E+LRKE+
Sbjct: 351 LEVKSLYEKLQKSAEDRQKVETTL-KLDRDRLEVSLVTMKKKLESTPEAPENVEKLRKEL 409
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 291 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 470
++++K D G+ F+R+ L ED DV A A N S G L + K+ + P
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIP 133
Query: 471 LPE 479
+ +
Sbjct: 134 IQQ 136
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 291 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 470
++++K D G+ F+R+ L ED DV A A N S G L + K+ + P
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIP 133
Query: 471 LPE 479
+ +
Sbjct: 134 IQQ 136
>AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical
protein C36E6.2 protein.
Length = 239
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 421 NNPLVDLLRAFAMTSVSS-VSLARRLNFVRISNGTHPSSNFICSCRNLSRCRFTSPNNIR 245
N L+ + AF T +SS V + S P+S F C R ++ RF P+ R
Sbjct: 63 NGDLLHMEEAFRQTCLSSTVKECTNREAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTR 122
Query: 244 LA 239
LA
Sbjct: 123 LA 124
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 124 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 228
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 124 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 228
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 124 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 228
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 16 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 48
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 423 EVSEDNKKVRRNPEQPLPEMNEELRK 500
E E ++ R PEQ LP NEE K
Sbjct: 633 EAQEAQEEARPEPEQSLPPFNEETEK 658
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 180 LLSIGFNSYLFVLGHFDFSLMENTF*FQKTSLLRLRS*D 64
L +IG ++F L HF F +++NTF S L + S D
Sbjct: 229 LTTIGLPLWMFYLEHFLFGVIKNTFLITLLSTLYIFSMD 267
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 133 KMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVE 249
K+TE ++ ETNG+ ++ + SE +EL+ + R+ +
Sbjct: 168 KLTESEKKLKETNGKVTKSRNQLSERVSELEAQLKREAD 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,739,206
Number of Sequences: 27780
Number of extensions: 375362
Number of successful extensions: 1309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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