Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40094
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 55 5e-08
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 55 5e-08
At5g66100.1 68418.m08327 La domain-containing protein similar to... 48 1e-05
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 43 3e-04
At2g43970.2 68415.m05468 La domain-containing protein contains P... 41 0.001
At2g43970.1 68415.m05467 La domain-containing protein contains P... 41 0.001
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 39 0.003
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 35 0.072
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 1.2
At5g61730.1 68418.m07746 ABC transporter family protein contains... 29 2.7
At3g61570.1 68416.m06896 intracellular protein transport protein... 29 3.6
At2g20890.1 68415.m02462 expressed protein 29 3.6
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 29 4.7
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 29 4.7
At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containi... 29 4.7
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 6.3
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 6.3
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 6.3
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 28 6.3
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 28 6.3
At4g07690.1 68417.m01209 hypothetical protein includes At2g24900... 28 8.3
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDD-GWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVS 431
F D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S+ L VS
Sbjct: 115 FSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESS--FLVVS 172
Query: 432 EDNKKVRRNPEQPLPEMNE 488
D KKV+R PLPE+ +
Sbjct: 173 ADEKKVKR--LSPLPEIRD 189
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDD-GWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVS 431
F D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S+ L VS
Sbjct: 115 FSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESS--FLVVS 172
Query: 432 EDNKKVRRNPEQPLPEMNE 488
D KKV+R PLPE+ +
Sbjct: 173 ADEKKVKR--LSPLPEIRD 189
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 407
F NL RD+ L++Q+ D+GWVP+ ++ F RLA+LT + I AL S
Sbjct: 347 FSADNLSRDEHLRDQMN-DEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 396
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 434
F D NL D +L + ++GWVP +I+ F R+ +T D D I AL S S +EV
Sbjct: 290 FSDENLENDHYLISLMD-EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNS--VEVQG 346
Query: 435 DNKKVR 452
D + R
Sbjct: 347 DQIRKR 352
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVS 431
F D+NL L I D +G+VP+ ++ F ++ + + +A L S L VS
Sbjct: 205 FSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNSAK--LFVS 262
Query: 432 EDNKKVRRNPEQPLPEMN-EELRKEI 506
ED KKVRR P+ E EEL+ I
Sbjct: 263 EDGKKVRR--ISPITESAIEELQSRI 286
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVS 431
F D+NL L I D +G+VP+ ++ F ++ + + +A L S L VS
Sbjct: 205 FSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNSAK--LFVS 262
Query: 432 EDNKKVRRNPEQPLPEMN-EELRKEI 506
ED KKVRR P+ E EEL+ I
Sbjct: 263 EDGKKVRR--ISPITESAIEELQSRI 286
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVS 431
F D++L ++ + + I D +G+VP+ + ++ LT + +++ AL S+ L VS
Sbjct: 156 FTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSK--LVVS 213
Query: 432 EDNKKVRRNPE 464
ED KKV+R +
Sbjct: 214 EDGKKVKRTSQ 224
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 34.7 bits (76), Expect = 0.072
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Frame = +3
Query: 255 FGDVNLHRDKFLQEQI-KLDDGWVPLEILTKFNRLA-----------KLTEDTDVIANAL 398
F D NL D FL++ + + +DG V L ++ F+++ + EDT + A A
Sbjct: 22 FSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDT-IKAVAD 80
Query: 399 NKSTSGLLEVSEDNKKVRRNPE-QPLPEMNEEL 494
TS L++S+D KKV R+ E L ++ E+L
Sbjct: 81 TLRTSSALKISDDGKKVGRSTELLKLEDLIEQL 113
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 506 MNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSR 673
++R I+ G D D L++ FKQ+ E+E+ + V+K + + G L SR
Sbjct: 126 VHRKIFVHGLGWDTKADSLIDAFKQYGEIED--CKCVVDKVSGQSKGYGFILFKSR 179
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 785 KILLVSGLRKSPAQSVNSSLSPNWALWHPKTFLPGSLVWNVANTDPGTSVSLWISQRI 612
+I+ +G S A S+ S + W+L+ P TF G + A + PG S W + I
Sbjct: 354 QIVTTAGFPYSSAYSIGSRVI--WSLFPPNTFSAGLQLLLEATSSPGDSGISWSERAI 409
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +3
Query: 225 YCDYSASRILFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNR--LAKLTEDTDVIANAL 398
Y + A ++ + +D+ ++ +L D LE K +KL V A
Sbjct: 472 YAEIEAKEHFERELAMAKDELMKLSARLKDSDERLESSNKEKEDVTSKLLHAEKVAAEWK 531
Query: 399 NKSTSGLLEVSEDNKKVRRNPEQPLPEMN 485
N+ T +V EDN KVRR EQ + +N
Sbjct: 532 NRVT----KVEEDNAKVRRVLEQSMTRLN 556
>At2g20890.1 68415.m02462 expressed protein
Length = 300
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 327 LEILTKFNRLAKLTEDTDV-IANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKE 503
+ I TKF+RL+ + T + + ++ T+ + VSE K + ++P+P + + +E
Sbjct: 33 IRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQE 92
Query: 504 I*TDQFMRK 530
+ Q + +
Sbjct: 93 LIVQQHLMR 101
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 500 RNMNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQG 652
R + I+ ++AS+DDL +YF +F +++ Y+ K K+ +G
Sbjct: 236 RGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDA----YIPKDPKRSGHRG 282
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 717 LGPLAS---KNFSAWFSSLECSKYRPWNKRFFVDFSTYLLIITFS 592
LGP++S +WFSS S +RP + F V F + L+ FS
Sbjct: 110 LGPISSYCPSYLLSWFSSSLPSIHRPLIRSFSVMFLEFFLLFVFS 154
>At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 754
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +2
Query: 482 ERGAS*RNMNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYL 661
E G S N++ ++ GF K+ ++D LN+ ++ + +Y + L + ++
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311
Query: 662 LHS 670
H+
Sbjct: 312 KHA 314
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 506 MNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSR 673
++R I+ G D + L+ FKQ+ E+E+ + +K + K G L SR
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKSKGYGFILYKSR 191
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 506 MNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSR 673
++R I+ G D + L+ FKQ+ E+E+ + +K + K G L SR
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKSKGYGFILYKSR 191
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 506 MNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFQGLYLLHSR 673
++R I+ G D + L+ FKQ+ E+E+ + +K + K G L SR
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKSKGYGFILYKSR 191
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 391 FAMTSVSSVSLARRLNFVRISNGTHPSSNFICSCR-NLSRCRFTSPNNIRLAE*SQY 224
FA ++S++SL R L + ++ P+S IC+ + N S +F R E Q+
Sbjct: 7 FASLTISTISLRRFLPRLHRNHSVKPNSRIICNLKLNYSAGKFREMGLSRSVELDQF 63
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 133 KMTEDKEVTVETNGQEENAKTENSEDETELDIAI 234
K E KEV E Q E KTE +++E+ ++ A+
Sbjct: 29 KPVEVKEVAPEVTTQAEEVKTEQAKEESPVEEAV 62
>At4g07690.1 68417.m01209 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 248
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 661 QIQTLEQAFLCGFLNVSSHNYILNFLKLLEV 569
+I+T CGF+ ++H Y++ F+ +EV
Sbjct: 72 EIRTFGVIENCGFVRSTTHKYMIEFMNAIEV 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,638
Number of Sequences: 28952
Number of extensions: 338739
Number of successful extensions: 1282
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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