Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40093
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    31   0.27 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   4.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.7  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = +2

Query: 317 LTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRVRAV 475
           L  ++ AEEAE IGV+H+ R  + +A++ +L A  +T Q  +++ L  R+  +
Sbjct: 165 LPSSIEAEEAEEIGVEHLLR-DTRDASVGTL-ATRVTQQAQSLQGLGQRLTEI 215



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 87  EQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLN 224
           E FK++ ++   +GWY TG      D+ ++  +      PV+++++
Sbjct: 87  EMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIID 132


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 324 YVKGASSIVARPLTTSITDSYK 259
           YV+G+ S+   PL TS+ +SYK
Sbjct: 437 YVEGSGSMSTTPLATSVNNSYK 458


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 776 FLLRI*RPPLKEESFAC-AFPMPLSVVEHVESIHKLMDSVAAL 651
           F L + R P+ +++F+   F + + +++H++ IH L+ + A L
Sbjct: 34  FFLTVNRTPIPKQTFSLIVFYILIMIIQHLKEIHYLISASAKL 76


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 647  ESFLSMSSGLHRCIDYRNVSGTAVKSTEVICWREHAPPLVKPVEA 513
            ESF+ + +G  +    R  +    KS EV C+ E   P+ KP  A
Sbjct: 1095 ESFIKIRNGNVKEEARRTRNAYTQKSGEVECFMETCTPIAKPAPA 1139


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = -1

Query: 489 VLSPSTARTRETNIFIADL-CAVRCSATKLLRAASPDETLAT*STPILSASSAANVYVKG 313
           +LS ST  T  +    A +  +    +   +   SP  T  T STP  S+S  +N  +  
Sbjct: 85  ILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPT--TSSTPT-SSSILSNSTIPS 141

Query: 312 ASSIVARPLTTSI---TDSYKTTVID 244
           +SSI A  +TT+I   +  + TT +D
Sbjct: 142 SSSISASTITTTIISGSTQFTTTFVD 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,005
Number of Sequences: 5004
Number of extensions: 55263
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)