Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40093
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 65 8e-11
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 31 0.86
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 30 2.0
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 30 2.0
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 30 2.0
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 30 2.0
10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840... 30 2.0
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 30 2.0
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 30 2.0
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 30 2.0
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 29 3.5
06_01_0256 - 1905767-1905901,1906375-1906407,1906489-1906585,190... 29 3.5
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744... 28 8.0
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 28 8.0
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 64.9 bits (151), Expect = 8e-11
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +3
Query: 12 NSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICD 191
NSFELV + + K+E +K+VF D LGWY+TG + D+ +H+ + D
Sbjct: 86 NSFELV--LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMD 143
Query: 192 INECPVMLMLNPA 230
INE PV L+LNPA
Sbjct: 144 INESPVYLLLNPA 156
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N++ A LTA+R +I
Sbjct: 443 FKLVDRYIEEIGEQHVVQVVTDNASVNTIAASLLTAKRPSI 483
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 421 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 461
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 382 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 422
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 316 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 356
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 260 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 300
>10_08_0517 +
18482902-18482986,18483074-18483291,18483888-18484049,
18484132-18484367,18484455-18484710
Length = 318
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 83 RGTIQTSVF*HGFPRMVYNWR 145
+G + T VF HGFP + Y+WR
Sbjct: 28 KGELGTVVFLHGFPEIWYSWR 48
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 320 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 360
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 463 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 503
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 323 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAI 445
+ L E IG HV +V + A++N+ A LTA+R +I
Sbjct: 316 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSI 356
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 86 GTIQTSVF*HGFPRMVYNWR 145
G + T VF HGFP + Y+WR
Sbjct: 50 GELGTVVFLHGFPEIWYSWR 69
>06_01_0256 -
1905767-1905901,1906375-1906407,1906489-1906585,
1907080-1907158,1907373-1907454,1907649-1907707,
1907821-1907893
Length = 185
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = -2
Query: 821 NIFCRRSPVINVIVTFLLRI*RPPLKEESFAC-AFPMPLSVVEHVESIHKLMDSVAALRE 645
++F RR P+ ++ + L+ PLKE+++ + P+P +V ++++ ++ + ALRE
Sbjct: 75 DLFKRREPMPSMDAIYFLQ----PLKEKAYIFFSSPIPKELVSYIKNDSSVIPRIGALRE 130
>10_08_0515 -
18473545-18473791,18473921-18474156,18474299-18474460,
18474731-18474948,18475048-18475120
Length = 311
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 83 RGTIQTSVF*HGFPRMVYNWR 145
+G T +F HGFP + Y+WR
Sbjct: 24 KGEAATLLFVHGFPEVWYSWR 44
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 86 GTIQTSVF*HGFPRMVYNWR 145
GT +F HGFP + Y+WR
Sbjct: 29 GTAPAVLFVHGFPELWYSWR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,080
Number of Sequences: 37544
Number of extensions: 378345
Number of successful extensions: 992
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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