Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40093
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   8e-12
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)          30   2.0  
SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1)                   30   2.7  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   6.1  
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         28   8.1  

>SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 34/64 (53%), Positives = 44/64 (68%)
 Frame = +2

Query: 287 NGRATMLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRV 466
           N    ML   + YTLA EEAERIGVDHVAR+SS      + V++HL AQ +AIKML +RV
Sbjct: 357 NFTTRMLFVEIPYTLATEEAERIGVDHVARLSSSGTVDGATVSDHLLAQYNAIKMLHARV 416

Query: 467 RAVL 478
           + ++
Sbjct: 417 KMIM 420



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 33/59 (55%), Positives = 43/59 (72%)
 Frame = +2

Query: 302 MLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRVRAVL 478
           ML   + YTLA EEAERIGVDHVAR+SS      + V++HL AQ +AIKML +RV+ ++
Sbjct: 465 MLFVEIPYTLATEEAERIGVDHVARLSSSGTVDGATVSDHLLAQYNAIKMLHARVKMIM 523



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +3

Query: 156 ERDIAVHRQICDINECPVMLMLNPAGRNGDQL 251
           E D+ +H+QIC+INE P+ L LNP  R  D L
Sbjct: 271 ESDLGMHKQICEINESPIFLKLNPLARTNDGL 302


>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
          Length = 450

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 322 IYISC*RG*ENWSRSCCQSFIWRSCSQ*FSCRTSDCTKIG 441
           +++ C  G  N+S S   SF    CS  FSC  S  T +G
Sbjct: 144 VWVCCACGMPNFSSSLLDSFAMVQCSNQFSCLDSSDTTLG 183


>SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1)
          Length = 436

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 575 SQQFRTHFYNQCNDVALMTYLGTIHEGLQRYP 670
           SQ  R H+   CN V L + L + H G+++ P
Sbjct: 199 SQNLRMHYLASCNSVDLHSTLFSYHNGVKKMP 230


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -1

Query: 312 ASSIVARPLTTSITDSYKTTVIDHHFCLPDSTSTSQD 202
           AS  V++ +T SI+ S K+   D    L  STSTSQD
Sbjct: 586 ASCDVSKEITKSISKSDKSDKSDFECKLDSSTSTSQD 622


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 396 AASPDETLAT*STPILSASSAANVYVKGASSIVARPLTTSITDSYKTTVIDHHFCLPDST 217
           A+SP ET+A  STP +S S        G +S +   +  + T +   T   +   LP++T
Sbjct: 785 ASSPYETIAVNSTPSISPSP------NGTTSFMYETIAVNATSTSVRTSKVYETILPNAT 838

Query: 216 ST 211
           ST
Sbjct: 839 ST 840


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 329 LAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRV 466
           + AEEAE +GV+H+ R      A    +++ +T Q +++K L +R+
Sbjct: 151 IGAEEAEEVGVEHLLRDIKNLTA--GTLSQRITNQLTSLKGLHARL 194


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 411 TKLLRAASPDETLAT*STPI-LSASSAANVYVKGASSIVARPLTTSITDSYKTTVIDHHF 235
           TKL++  S DETL   STPI LSASS A   VK    + A    T+  D+    +   HF
Sbjct: 630 TKLVQLQSKDETL---STPILLSASSGALDAVKCLIELNADYTVTNNHDNGMIQLASLHF 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,198,983
Number of Sequences: 59808
Number of extensions: 455145
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)