Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40093
         (834 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70735-1|AAD03469.1|  297|Homo sapiens 34 kDa Mov34 homolog prot...   126   1e-28
BC002520-1|AAH02520.2|  327|Homo sapiens COP9 constitutive photo...   126   1e-28
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              32   2.2  
Z34277-1|CAA84031.1|  477|Homo sapiens mucin protein.                  30   9.0  

>U70735-1|AAD03469.1|  297|Homo sapiens 34 kDa Mov34 homolog
           protein.
          Length = 297

 Score =  126 bits (303), Expect = 1e-28
 Identities = 67/133 (50%), Positives = 84/133 (63%)
 Frame = +2

Query: 248 ITVVLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLT 427
           + V ++ESVID++NG ATML A LTYTLA EEAERIGVDHVAR+++  +  NS VAEHL 
Sbjct: 133 LPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLI 192

Query: 428 AQRSAIKMLVSRVRAVLGDSTRYKGW*XXXXXXXXXXXXXXXXXXXXXTSQQFRTHFYNQ 607
           AQ SAIKML SRV+ +L      +                        ++ +F+T FY+Q
Sbjct: 193 AQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQ 252

Query: 608 CNDVALMTYLGTI 646
           CNDV LM YLGTI
Sbjct: 253 CNDVGLMAYLGTI 265



 Score = 87.0 bits (206), Expect = 7e-17
 Identities = 39/78 (50%), Positives = 49/78 (62%)
 Frame = +3

Query: 12  NSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICD 191
           NSFEL+             YY  KEEQFKQVF +++FLGWYTTG  P   DI VH+Q+C+
Sbjct: 55  NSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCE 114

Query: 192 INECPVMLMLNPAGRNGD 245
           I E P+ L LNP  ++ D
Sbjct: 115 IIESPLFLKLNPMTKHTD 132



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 648 TKGCNAIHQLVNRFNVLYDRQGHGEGACEGLFF 746
           TK CN ++Q VN+FNVLYDRQG G     GLFF
Sbjct: 266 TKTCNTMNQFVNKFNVLYDRQGIGR-RMRGLFF 297


>BC002520-1|AAH02520.2|  327|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 6 (Arabidopsis)
           protein.
          Length = 327

 Score =  126 bits (303), Expect = 1e-28
 Identities = 67/133 (50%), Positives = 84/133 (63%)
 Frame = +2

Query: 248 ITVVLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLT 427
           + V ++ESVID++NG ATML A LTYTLA EEAERIGVDHVAR+++  +  NS VAEHL 
Sbjct: 163 LPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLI 222

Query: 428 AQRSAIKMLVSRVRAVLGDSTRYKGW*XXXXXXXXXXXXXXXXXXXXXTSQQFRTHFYNQ 607
           AQ SAIKML SRV+ +L      +                        ++ +F+T FY+Q
Sbjct: 223 AQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQ 282

Query: 608 CNDVALMTYLGTI 646
           CNDV LM YLGTI
Sbjct: 283 CNDVGLMAYLGTI 295



 Score = 87.0 bits (206), Expect = 7e-17
 Identities = 39/78 (50%), Positives = 49/78 (62%)
 Frame = +3

Query: 12  NSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICD 191
           NSFEL+             YY  KEEQFKQVF +++FLGWYTTG  P   DI VH+Q+C+
Sbjct: 85  NSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCE 144

Query: 192 INECPVMLMLNPAGRNGD 245
           I E P+ L LNP  ++ D
Sbjct: 145 IIESPLFLKLNPMTKHTD 162



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 648 TKGCNAIHQLVNRFNVLYDRQGHGEGACEGLFF 746
           TK CN ++Q VN+FNVLYDRQG G     GLFF
Sbjct: 296 TKTCNTMNQFVNKFNVLYDRQGIGR-RMRGLFF 327


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -1

Query: 477 STARTRETNIFIADLCAVRCSATKLLRAASPDETLA-----T*STPILSASSAANVYVKG 313
           ST   R T+I  A   +   S T    +A+   T +     T STP  S +SAA      
Sbjct: 397 STISARTTSIISAPTTSTTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTS 456

Query: 312 ASSIVARPLTTSITDSYKTTVIDH 241
           +S     P+TT+ T S   T   H
Sbjct: 457 SSGTTPSPVTTTSTASVSKTSTSH 480


>Z34277-1|CAA84031.1|  477|Homo sapiens mucin protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 417 SATKLLRAASPDETLAT*STPILSASSAANVYVKGASSIVARPLTTSITDSYKTTVIDH 241
           SAT     ++P  T +T STP  S +SAA       S     P+TT+ T S   T   H
Sbjct: 248 SATTTSTTSAP--TSSTTSTPQTSKTSAATSSTTSGSGTTPSPVTTTSTASVSKTSTSH 304


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,017,346
Number of Sequences: 237096
Number of extensions: 1990563
Number of successful extensions: 3547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)