Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40093
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    42   5e-04
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    31   0.77 
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    30   2.3  

>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query: 314 PLTYTLAAEEAERIGVDHVARVSSGEAALNSLVA-EHLTAQRSAIKMLVSRVRAVL 478
           P+ + L +EE+ER+GV+H+A++S+        V  +H  AQ +A+ ML +RV  ++
Sbjct: 169 PIEWILVSEESERVGVNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIV 224


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 93  FKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLNPAGRN 239
           F +V +    +GWY TG    + DIA++ Q+      PV+++++   +N
Sbjct: 115 FYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKN 163



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 329 LAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRVRAV 475
           + AEEAE +GV+H+ R    + A    +++ +T Q   ++ L S++ ++
Sbjct: 195 IGAEEAEEVGVEHLLRDIKDQTA--GTLSQRITDQLMGLRGLQSQLESI 241


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 357  PILSASSAANVYVKGASSIVARPLTTSITDSYKTTVIDHHFCLPDS 220
            P++S S+    +++GA  +  R  + S+TD   +  +  H  + +S
Sbjct: 2816 PLISTSTLTTTFIRGAQDVTGRQGSVSVTDRGHSATVSTHRIVRES 2861


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 357  PILSASSAANVYVKGASSIVARPLTTSITDSYKTTVIDHHFCLPDS 220
            P++S S+    +++GA  +  R  + S+TD   +  +  H  + +S
Sbjct: 2825 PLISTSTLTTTFIRGAQDVTGRQGSVSVTDRGHSATVSTHRIVRES 2870


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/79 (29%), Positives = 30/79 (37%)
 Frame = +1

Query: 394 CSQ*FSCRTSDCTKIGYKNVSFSCTGRTWRQYAL*GMVTSASTGFTKGGACSRQQITSVD 573
           CS    C    C+KIGY  + F C+G              AS+  T+ G C  Q    + 
Sbjct: 401 CSIDKDCPEGTCSKIGYNGLGFCCSG-------------PASS--TRDGRCPSQAADKLK 445

Query: 574 FTAVPDTFL*SMQRCSPDD 630
               PD    S   CS D+
Sbjct: 446 CLIYPDNSCHSDHECSEDE 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,891
Number of Sequences: 27780
Number of extensions: 328112
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)