Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40093
(834 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 70 2e-12
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 67 1e-11
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 32 0.41
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 32 0.54
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 31 1.2
At5g23330.1 68418.m02729 riboflavin biosynthesis protein-related... 29 2.9
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 29 2.9
At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putat... 29 2.9
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 29 5.0
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 6.6
At1g71820.1 68414.m08300 expressed protein 28 8.8
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 70.1 bits (164), Expect = 2e-12
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Frame = +2
Query: 248 ITVVLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARV--SSGEAALNSLVAEH 421
+ V +YES + V++G ++ A +YT+ EAERI VDHVA + S G +A L A H
Sbjct: 153 LPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAA-H 211
Query: 422 LTAQRSAIKMLVSRVRAVLGDSTRYKGW*XXXXXXXXXXXXXXXXXXXXXTSQQFRTHFY 601
LT SAIKML SR+R + + + S++F+ +F
Sbjct: 212 LTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFL 271
Query: 602 NQCNDVALMTYLGTI 646
+ ND L+TYL I
Sbjct: 272 MEYNDKLLITYLAMI 286
Score = 65.3 bits (152), Expect = 5e-11
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 12 NSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICD 191
NSFEL++ + K+E +K+VF D LGWY+TG E D+ +H+ + D
Sbjct: 75 NSFELLYD--PSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMD 132
Query: 192 INECPVMLMLNPA 230
INE PV ++LNPA
Sbjct: 133 INESPVYVLLNPA 145
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +3
Query: 12 NSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICD 191
NSFEL+F + K+E +K+VF D LGWY+TG +E D+ +H+ + D
Sbjct: 75 NSFELIFD--PALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMD 132
Query: 192 INECPVMLMLNPA 230
INE PV ++LNPA
Sbjct: 133 INESPVYVLLNPA 145
Score = 65.3 bits (152), Expect = 5e-11
Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +2
Query: 248 ITVVLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARV--SSGEAALNSLVAEH 421
+ V +YES V++G + +YT+ EAERI VDHVA + S G +A L A H
Sbjct: 153 LPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAA-H 211
Query: 422 LTAQRSAIKMLVSRVRAVLGDSTRYKGW*XXXXXXXXXXXXXXXXXXXXXTSQQFRTHFY 601
LT SAIKML SR+R + + S++F +F
Sbjct: 212 LTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFL 271
Query: 602 NQCNDVALMTYLGTI 646
+ ND LM+YL I
Sbjct: 272 MEYNDKLLMSYLAMI 286
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 69 YYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLN 224
Y+ FK++ + +GWY+TG E D+ VH PV+++++
Sbjct: 81 YHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIID 132
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 69 YYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLN 224
Y+ FK++ + +GWY+TG E D+ VH PV+++++
Sbjct: 81 YHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIID 132
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 335 AEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRVRAVLGDST 490
AEE+ G+D V R+ + L +L+ + + R+A +M + R+R + D T
Sbjct: 627 AEESYTQGIDSVPRIETSRNCLRALMLCY--SNRAATRMALGRMREAIADCT 676
>At5g23330.1 68418.m02729 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 354
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 566 EVICWREHAPPLVKPVEAEVTIPYSAYCRQVRPVHEKLTF 447
EV+ W+ AP + K V +++YC + PV ++ F
Sbjct: 122 EVLGWKPRAPIVAKCDRKRVLSSWASYCGNIAPVEFEIEF 161
>At1g22670.1 68414.m02833 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 422
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = -1
Query: 420 CSATKLLRAASPDETLAT*STPILSASSAANVYVKGASSIVARPLTTSITDS--YKTTVI 247
C K + DE LAT STP LS+S A + V I + PL +S++ S + ++
Sbjct: 270 CPVCKRDARTTADEPLATESTPFLSSSIATSSLV----CIDSPPLGSSVSFSPAHVSSSF 325
Query: 246 DHHFCLPDSTSTSQDTH*YHRSVCELLCLVLREHLQL 136
H F + S+ + R L R HL +
Sbjct: 326 IHQFVRSSPMNGSRISENLRRQASPLQSSSQRSHLSM 362
>At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putative
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family; non-consensus GC
donor splice site at exon boundary 46833
Length = 676
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 788 VIVTFLLRI*-RPPLKEESFAC-AFPMPLSVVEHVESIHKLMDSVAALRESFLS 633
+IV FL + R PL ++F + +P +V H++S ++ + ALRE FL+
Sbjct: 114 IIVMFLSDMSGREPLYRKAFIFFSSTIPKELVNHIKSDSSVLPRIGALREGFLT 167
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
chaperonin family
Length = 1791
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 266 ESVIDVVNGRATMLLAPLTYTLAAEEAERIGVD 364
ES++ + + R+T LL PL+YT A G D
Sbjct: 1457 ESILSISSSRSTSLLDPLSYTKALHARVSYGED 1489
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 393 ASPDETLAT*STPILSASSAANVYVKGASSIVARPLTTSITDSYKTT 253
+SP++ A + I S SS V VKG S + TTS TD+ TT
Sbjct: 875 SSPEDLEAQAAETIQSLSSC--VLVKGPSGVTWSTTTTSTTDAATTT 919
>At1g71820.1 68414.m08300 expressed protein
Length = 752
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 293 RATMLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQRSAIKMLVSRVRA 472
R L PL L + I D++AR + +A L+++VAE + ++ ++ L S +
Sbjct: 16 REVAKLLPLPELL--QSISSIKADYIARQQANDAQLSTMVAEQVEQAQAGLESLSSSEKT 73
Query: 473 V 475
+
Sbjct: 74 I 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,500
Number of Sequences: 28952
Number of extensions: 296758
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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