Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40092
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61690.1 68416.m06913 expressed protein                             31   0.90 
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    31   1.2  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    29   2.7  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    28   6.3  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    28   6.3  
At1g26700.1 68414.m03252 seven transmembrane MLO family protein ...    28   6.3  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    28   8.4  

>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 2   WTSTNNSRPKLAKSVQPFPSFSESRTAIHFYIYRLMQCYFIAWQIFI 142
           W    +   KL   +QP P   + R A+  Y+ RL+   F   QIF+
Sbjct: 39  WAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFM 85


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 83  IHFYIYRLMQCYFIAWQIFILSVTYYFLILDMPS 184
           +H +  R  +CY I W+  I++VT  ++ILD P+
Sbjct: 192 VHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPA 225


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 250 RSYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHNKY 387
           RS+    RSL E AK+FN+ K  + +H+  T K    +K +L NK+
Sbjct: 42  RSHHTVARSLEEKAKRFNVFKHNV-KHIHETNKKDKSYKLKL-NKF 85


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 386 YLLCNLFLCPP*DFIVLVTCL 324
           Y  C  ++CPP DF+V   CL
Sbjct: 534 YSSCPFYICPPCDFVVHQKCL 554


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 377 CNLFLCPP*DFIVLVTCL 324
           C L++CPP DF++  +C+
Sbjct: 294 CPLYMCPPCDFVIHKSCI 311


>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
           MLO-like protein 14 (MLO14) identical to membrane
           protein Mlo14 [Arabidopsis thaliana]
           gi|14091598|gb|AAK53807; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 554

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -2

Query: 384 FIM*SFFVSTLRFHCSCYMSVQNRLTYIKLLSYFN*GPIPNFIASIAVFNIKGSYL 217
           FIM      T  FH     S++     I  +S    GP+  F+    +FNIKGS L
Sbjct: 256 FIMNHHLTLTYDFHSYMIRSMEEEFQKIVGVS----GPLWGFVVGFMLFNIKGSNL 307


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -1

Query: 574 IDNEL----TIK*KYINK*RFKSQYNHTR*VISKSLYFYANSIQKSHYY 440
           +DN L     +K  ++N+  +KS++N T  ++S  +Y Y+N+I   + Y
Sbjct: 308 VDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIY-YSNTITGENIY 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,758
Number of Sequences: 28952
Number of extensions: 299617
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)