Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40091
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.003
03_02_0484 + 8805053-8805538 38 0.003
03_02_0483 - 8804021-8804485 38 0.003
03_02_0478 + 8775892-8776377 37 0.010
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.023
01_01_0229 - 1943473-1943922 35 0.031
02_05_0494 + 29486960-29487454 35 0.041
01_01_0231 + 1951047-1951499 35 0.041
11_02_0041 - 7669692-7670312 33 0.16
02_02_0077 - 6586638-6587165 33 0.16
01_01_0227 + 1933247-1933699 32 0.22
12_01_0061 + 514798-515967 31 0.66
12_02_0665 + 21670956-21671834,21672563-21672583 29 2.0
01_05_0796 - 25297792-25298514 29 2.7
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 3.5
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 28 3.5
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 27 6.2
11_06_0743 + 26847652-26849424 27 8.2
10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134... 27 8.2
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 27 8.2
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 27 8.2
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 27 8.2
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 27 8.2
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 264
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 264
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 264
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
S +F+RR+ LP+ A PE +++ + +GVLT+T P+
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPK 146
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>02_05_0494 + 29486960-29487454
Length = 164
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 154 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRR 258
R V ++ LPE AA + +R++ DGVLT+T P+R
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 157 QFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
+F RR+ +P GA V +RL DGVLT+T P+
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPK 172
>02_02_0077 - 6586638-6587165
Length = 175
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 157 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYPTPSRERER 288
+F+RR+ LPE A + V + DGVLT+T ++ P P ++ R
Sbjct: 117 KFMRRFPLPESADLDGVRAEY-KDGVLTVTVDKK-PPPEPKKPR 158
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
S +F RR+ LP GA + V + + +GVLT+T P+
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>12_01_0061 + 514798-515967
Length = 389
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 352 SWVPSLWSLISLRTGPVCAMGTFLSPLTASGTF 254
SW PS +LISL +G CA F S + A+ F
Sbjct: 295 SWSPSKLNLISLGSGRFCAAKIFRSNMPAAAAF 327
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 160 FVRRYALPEGAAPETVESRLSSDGVL--TITAPRRYPTPSRERERCPSHRPV 309
F+RR LP A+P SR+SS L + PR +P + PSH PV
Sbjct: 24 FLRRGILPSPASPLPFASRVSSAAPLRHRLPPPRFSLSPIPKTLSSPSHVPV 75
>01_05_0796 - 25297792-25298514
Length = 240
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -3
Query: 208 PQSQAPRLQAARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSA 53
P APR + VGR + TRA LR RC RR+ S S A A
Sbjct: 130 PARAAPRRSRSEKVGR-GRRPTRAASPELRRSESERCRRRRRSLSSSSASLA 180
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 166 RRYALPEGAAPETVESRLSSDGVLTIT-APR-RYPTPSRERERCPSHR 303
RR ALP G+ PE ESR S V + +PR R R R R P+ R
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 109 PPRCTRRQSSPKSLPARSAARP 44
P R TRR++SP S PA AA P
Sbjct: 94 PARSTRRKTSPGSSPASVAAAP 115
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 167 DVTRCLKARRLRLWNRGCHQTGFSP 241
+ + A R+RLWN+G F P
Sbjct: 178 ETAHVISANRIRLWNKGVDSASFHP 202
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -1
Query: 405 FGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERDRSVRWAP 286
F T LQ H Y G + SPC+ S W P
Sbjct: 124 FSTRSQEALQRHAMYNNLSGIASTAASSPCDASSSSSWHP 163
>10_08_0807 -
20712066-20712290,20712750-20713339,20713415-20713463,
20713669-20713821
Length = 338
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 290 HLSLSLDGVGYLLGAVMVRTPSDDSRDSTVSGAA 189
HL+ ++ VG + A MVR+P D DST AA
Sbjct: 288 HLAAAIWAVGRVFWA-MVRSPLDSPADSTTPSAA 320
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 267 AVKGERKVPIAQTGPVRKEIKDQSEGTQDAENK*GGFAM 383
AV+G R+VP+ P R+ + Q +G + A G A+
Sbjct: 2 AVEGRRRVPLPLPPPTRRGKQQQQQGGERARRVQAGDAL 40
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 167 DVTRCLKARRLRLWNRGCHQTGFSP 241
+ + + A R+RLWN+G F P
Sbjct: 189 ETAKVVSANRVRLWNKGVDSESFHP 213
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 225 RRGSHHHRAEKVPDAVKGERKVPIAQTGPVRKEIKDQSE-GTQDAEN 362
R G HHHR+ D+V+G A + +E+ ++ E G ++AEN
Sbjct: 142 RHGGHHHRS----DSVRGGGTGATAGSDKDGREVHNKEEKGMKEAEN 184
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 296 RTDRSRSQGDQGPERGNPGC 355
R R + QG++G ERG GC
Sbjct: 80 RRRRRKQQGEEGEERGERGC 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,382
Number of Sequences: 37544
Number of extensions: 243456
Number of successful extensions: 889
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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