Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40091
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 56   2e-08
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 51   5e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 51   6e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 51   6e-07
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   50   1e-06
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       49   2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   48   6e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 30   1.2  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    29   2.1  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   2.8  
SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)                   27   6.4  
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)                     27   6.4  
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)                27   8.4  

>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 31/82 (37%), Positives = 43/82 (52%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G + V             + ++F R + LPEG  PE V SR+S
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGIDPENVTSRIS 70

Query: 223 SDGVLTITAPRRYPTPSRERER 288
           + G L I A +  P P  E E+
Sbjct: 71  NHGHLHIEARKALPKPEAELEK 92


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 28/85 (32%), Positives = 46/85 (54%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ F PEEI+ K  +G I V            + S++F R Y LPEG    ++ +R++
Sbjct: 11  LDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVDESSISTRIA 69

Query: 223 SDGVLTITAPRRYPTPSRERERCPS 297
            DG+L + A ++ P P+    + P+
Sbjct: 70  EDGMLHVEALKKSP-PATTENKAPA 93



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 35/72 (48%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV  F PEE+ VK   G+ +             + +RQF R + LP     +T+  RL 
Sbjct: 104 LDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDMDTLVPRLG 162

Query: 223 SDGVLTITAPRR 258
            DGVL I A +R
Sbjct: 163 KDGVLYIEADKR 174


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 28/81 (34%), Positives = 42/81 (51%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G++ V             + ++F R +ALPEG     V++R+S
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVEASNVKTRIS 70

Query: 223 SDGVLTITAPRRYPTPSRERE 285
           + G L I A +  P P    E
Sbjct: 71  NHGQLHIEAMKALPGPDGGEE 91


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 28/81 (34%), Positives = 42/81 (51%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G++ V             + ++F R +ALPEG     V++R+S
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVEASNVKTRIS 70

Query: 223 SDGVLTITAPRRYPTPSRERE 285
           + G L I A +  P P    E
Sbjct: 71  NHGQLHIEAMKALPGPDGGEE 91


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+++ PEEIS+K   G I +            Y + +F R Y LP+G    TV SR++
Sbjct: 45  LDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSYNLPDGVDVSTVSSRIT 103

Query: 223 SDGVLTITAPRRYP 264
            DG+L I A +  P
Sbjct: 104 GDGLLHIEALKAEP 117



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 166 RRYALPEGAAPETVESRLSSDGVLTITAPR-RYPTPSRERE 285
           R + LP+    +++ SRL  DG L I A R  +PTP  ER+
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTP-HERQ 200


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G++ V             + ++F R + LPEG     V++R+S
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEASNVKTRIS 70

Query: 223 SDGVLTITAPRRYPTPSRERE 285
           + G L I A +  P P    E
Sbjct: 71  NHGQLHIEAMKALPGPDGGEE 91



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G++ V             + ++F R + LPEG     V++R+S
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEASNVKTRIS 304

Query: 223 SDGVLTITAPRRYPTPSRERE 285
           + G L I A +  P P    E
Sbjct: 305 NHGQLHIEAMKALPGPDGGEE 325


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G++ V             + ++F R + LPEG     V++R+S
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEASNVKTRIS 70

Query: 223 SDGVLTITAPRRYPTPSRERE 285
           + G L I A +  P P    E
Sbjct: 71  NHGQLHIEAMKALPGPDGGEE 91


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 26/76 (34%), Positives = 39/76 (51%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 222
           LDV+ + PEEIS K  +G + V             + ++F R + LPEG     V++R+S
Sbjct: 13  LDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEASNVKTRIS 71

Query: 223 SDGVLTITAPRRYPTP 270
           + G L I A +  P P
Sbjct: 72  NHGQLHIEAMKALPEP 87


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 43  LDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPE 186
           LDV  F PEE+ VK   G+ +             + +RQF R + LP+
Sbjct: 32  LDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPQ 78


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 220  TAAIPQSQAPRLQAARNVGRTALKYTRARLSSLRA 116
            TA +P  QA RL   R  G    +YTR  +SSL A
Sbjct: 1773 TAPVPNKQA-RLTIGRQSGNAPYRYTRMYISSLYA 1806


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 414 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 307
           R+ FGT    PLQ +  YF +  +   G  +PC+R+
Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643


>SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 181 AARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSAARPD 41
           A R    T +++TR+R + L+ CL  R  R   +P +L   +  R D
Sbjct: 25  AKREDNYTRIRFTRSRRAKLQQCLYERFFRELHAPWALEDNNGERLD 71


>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 261 PDAVKGE-RKVPIAQTGPVRKEI 326
           PD  KGE RKVP+A   P++ EI
Sbjct: 298 PDVFKGEVRKVPLAVREPLKNEI 320


>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
          Length = 219

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 107 WKASTKR-RKTSTGIFQGSSSDVTRCLKAR 193
           WK S +R R+T+TGI Q +S+ +T+ L+ +
Sbjct: 35  WKNSVQRARRTATGINQRNSNLITQTLREK 64


>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
          Length = 407

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 387 HFNLFQSIVCIRLIQFVSYFK 449
           HF LFQ+    R+IQ++SY++
Sbjct: 287 HFALFQTPAHYRVIQYISYYQ 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,705
Number of Sequences: 59808
Number of extensions: 263697
Number of successful extensions: 951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)